| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_0140 |
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| Symbol | |
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| ID | 5191518 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | + |
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| Start bp | 141115 |
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| End bp | 143862 |
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| Gene Length | 2748 bp |
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| Protein Length | 915 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 640584581 |
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| Product | DNA polymerase I |
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| Protein accession | YP_001265499 |
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| Protein GI | 148545397 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0258] 5'-3' exonuclease (including N-terminal domain of PolI)
[COG0749] DNA polymerase I - 3'-5' exonuclease and polymerase domains |
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| TIGRFAM ID | [TIGR00593] DNA polymerase I |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCCAAG CGCCCCTCGT CCTGGTGGAC GGTTCCTCCT ACCTTTATCG CGCCTTCCAC
GCGCTGCCAC CGCTGACCAC GTCCAAGGGC ATGCCGACCG GTGCGGTGAA GGGTGTGCTG
AACATGCTCA AGAGCCTGCG CAAGCAATAT CCCGACAGCC TGTTCGCCGT GGTGTTCGAC
GCCAAGGGCG GCACTTTCCG CGATGCCATG TTCGCTGAGT ACAAGGCCAA CCGCCCCAGC
ATGCCGGATG ACCTGCGGGT ACAGATCGAG CCGCTGCACG CCAGCGTCAA GGCGCTGGGC
TACCCGCTGC TGTGTGTGGA GGGTGTCGAG GCTGACGACG TGATCGGCAC CCTGGCGCGC
AGCAGTGCCG CCCTGGGTCG CCCGGTGATC ATCTCGACCG GTGACAAGGA CATGGCGCAG
CTGGTGGACG GGCACATTAC CTTGGTCAAC ACCATGACCG GAAGCGTGCT GGACGTGGCT
GGCGTGCACG AGAAGTTCGG CGTCGGCCCG GAACACATCA TCGACTTCCT GGCCCTGATG
GGTGACAAGG TCGACAACAT CCCGGGCGTG CCGGGCGTGG GCGAAAAAAC GGCAGTGGGG
CTGCTGACCG GCATCGGCGG CGGTCTCAGC GACCTTTACG CCAACCTGGA CAAGGTGCCA
ACGCTGGCCA TTCGCGGCGC CAAGACCTTG CCGGCCAAGC TGGAGGAGCA CCGCGACGCG
GCATTCCTGT CCTACGAGCT GGCCACCATC AAGGTTGACG TGCCGCTGGA TGTCGAGGTC
GAGGCGCTGG TGTGCGGTGA ACCTGACCGC GAGGCGTTGC TGGCGTTGTA CACCGAGATG
GAGTTCAAGA GCTGGGTCGC CGAAGTGCAG CGCGATGCGG CCAAGGCTGG TGATGATGTC
GGCCCGGCTG TGGAGCCTGC GGCCAAGGTC GAGCCCAAAT ACGAAACCAT CCTCGACCAG
GCCCGTTTCG ACGCCTGGCT GGAGAAGCTG CGCCAGGCAC CGCTGTTCGC CTTCGACACC
GAGACCACCG GCCTGGACGC CCAGCAGGCG CAGTTGGTCG GCCTGTCCTT CGCTGTCGAG
CCGCATGAAG CGGCCTATGT GCCGCTGGCC CACGATTATG AAGGCGCGCC GGTCCAGCTG
GACCGCGAGG CCGTGCTGTT GGCGCTGAAG CCCTTGCTGG AGGACCCGGC CAAGGCCAAG
GTCGGGCAGA ACGCCAAGTA CGACATCAAC ATCCTCGCCA ATGGCTCCCC CCCTATCGAG
ATGCGCGGTG TGGCCTATGA CACCATGCTC GAGTCATACG TGCTGAACTC CACCGCCACC
CGTCATGACA TGGACAGCCT GGCGCAGAAG TACCTCGACC ACACCACGAT CGCCTTCGAG
GACATCGCCG GCAAGGGTGC CAAGCAGCTT ACCTTCAACC AGATCACCCT GGACAAGGCC
GGCCCCTACG CCGCCGAAGA CGCCGACATC ACCCTGCGCC TGCACCATGC ATTACAGGCC
CGCCTGGCAC AGACGCCGAG CGTGCAACCG GTGCTGATGG ATATCGAGAT GCCGCTGGTG
CCGGTGCTGG CCAGGATCGA GCGCCAGGGT GCGCTGGTCG ATGCCGAGCT GTTGAAGGTA
CAGAGCGGTG AGCTGGGCGT GAAGATGGCT GAGCTGGAGC TGCGTGCCTA CGAGCTCGCC
GGTGAGACGT TCAACCTCGG CTCGCCCAAG CAGCTGGGCA CGATTCTTTA CGACAAGCTG
GGCATGCCGG TGCTGAGCAA GACCGCCAAG GGCCAGCCAT CCACCGCCGA AGCAGTGCTC
GACGAACTGG CCGAACAAGG CTACCCGCTG CCAGAGGTGC TGATGCAGTA CCGCAGCCTG
AGTAAGCTCA AGAGCACCTA CACCGACAAG TTACCGGGGC AGATCAACCC GCGCACCGGG
CGCATCCACA CGTCCTACCA GCAGGCGGTG GCGGCCACCG GCCGGTTGTC GTCGAGCGAC
CCGAACCTGC AGAACATTCC GATCCGCACC GCTGAAGGGC GGCGTATTCG CCAGGCGTTC
ATCGCCAGTC CGGGCTACAA GCTTCTGGCG GCGGACTATT CACAGATCGA GCTGCGCATC
ATGGCCCACC TGGCCAAGGA CGAAGGCTTG CTGCATGCCT TCCGCAATGA CCTGGACGTG
CACCGCGCCA CGGCAGCCGA AGTGTTCGGT GTGGCCCTGG AAGACGTGAC CACCGACCAG
CGCCGCAGCG CCAAGGCCAT CAACTTCGGC CTGATTTACG GCATGAGCGC CTTTGGCCTG
GCCAAGCAGA TCGGCGTCGA CCGCAAGCAG TCACAGGACT ACATCGACCG TTATTTTGCC
CGCTACCCGG GCGTGCTGGC CTATATGGAG CGCACCCGCG CCCAGGCGGC CGAGCAAGGC
TTTGTCGAAA CCCTGTTTGG CCGCCGGCTG TACTTGCCAG ACATCAATGC CAAGAACCCT
GCCCTGCGCA AGGGCGCCGA GCGCACGGCG ATCAACGCCC CGATGCAGGG TACTGCTGCC
GACATCATCA AGCGGGCCAT GGTCAAAGTA GATAACTGGT TGAGCGAGAG CGGGCTGGAT
GCCCGGGTGA TCCTTCAGGT GCACGACGAA CTGGTGCTTG AGGTACGCGA GGACCTGGTG
GAGCAGGTGA AAGATGAAAT TCGCCAGCAC ATGAGCCAGG CCGCGCAGCT GGATGTGCCG
CTGCTTGTCG AAGCAGGCGT TGGTGCGAAT TGGGACGAAG CTCACTGA
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| Protein sequence | MSQAPLVLVD GSSYLYRAFH ALPPLTTSKG MPTGAVKGVL NMLKSLRKQY PDSLFAVVFD
AKGGTFRDAM FAEYKANRPS MPDDLRVQIE PLHASVKALG YPLLCVEGVE ADDVIGTLAR
SSAALGRPVI ISTGDKDMAQ LVDGHITLVN TMTGSVLDVA GVHEKFGVGP EHIIDFLALM
GDKVDNIPGV PGVGEKTAVG LLTGIGGGLS DLYANLDKVP TLAIRGAKTL PAKLEEHRDA
AFLSYELATI KVDVPLDVEV EALVCGEPDR EALLALYTEM EFKSWVAEVQ RDAAKAGDDV
GPAVEPAAKV EPKYETILDQ ARFDAWLEKL RQAPLFAFDT ETTGLDAQQA QLVGLSFAVE
PHEAAYVPLA HDYEGAPVQL DREAVLLALK PLLEDPAKAK VGQNAKYDIN ILANGSPPIE
MRGVAYDTML ESYVLNSTAT RHDMDSLAQK YLDHTTIAFE DIAGKGAKQL TFNQITLDKA
GPYAAEDADI TLRLHHALQA RLAQTPSVQP VLMDIEMPLV PVLARIERQG ALVDAELLKV
QSGELGVKMA ELELRAYELA GETFNLGSPK QLGTILYDKL GMPVLSKTAK GQPSTAEAVL
DELAEQGYPL PEVLMQYRSL SKLKSTYTDK LPGQINPRTG RIHTSYQQAV AATGRLSSSD
PNLQNIPIRT AEGRRIRQAF IASPGYKLLA ADYSQIELRI MAHLAKDEGL LHAFRNDLDV
HRATAAEVFG VALEDVTTDQ RRSAKAINFG LIYGMSAFGL AKQIGVDRKQ SQDYIDRYFA
RYPGVLAYME RTRAQAAEQG FVETLFGRRL YLPDINAKNP ALRKGAERTA INAPMQGTAA
DIIKRAMVKV DNWLSESGLD ARVILQVHDE LVLEVREDLV EQVKDEIRQH MSQAAQLDVP
LLVEAGVGAN WDEAH
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