| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_0088 |
|---|
| Symbol | |
|---|
| ID | 5193294 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | - |
|---|
| Start bp | 93745 |
|---|
| End bp | 94722 |
|---|
| Gene Length | 978 bp |
|---|
| Protein Length | 325 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 640584529 |
|---|
| Product | alcohol dehydrogenase |
|---|
| Protein accession | YP_001265447 |
|---|
| Protein GI | 148545345 |
|---|
| COG category | [C] Energy production and conversion
[R] General function prediction only |
|---|
| COG ID | [COG0604] NADPH:quinone reductase and related Zn-dependent oxidoreductases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 0.654811 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCAAGC GTATCCAGTT CAGCCAGCAT GGCGGCCCGG AAGTGCTGCA GTTTGTGGAA
TTCGAACCCA CCCCGCCCGG GCCACAGCAG GTGCGTGTGC GTAACCATGC GATCGGCCTG
AACTTCATCG ACACCTACTT CCGAAGCGGG CTGTATGCGC CGCCGTCCCT GCCTTCTGGC
CTGGGTACCG AAGCGGCAGG TGTGGTAGAG GCCGTGGGCG AAGGCGTGTC CCGGCTGAAG
GTAGGAGACC GTGTGGCACA TGCCGGCGGC CCGCTGGGCG CCTACAGCGA GGTGCATACG
CTACCGGAAG CCAACCTGGT CAAGCTGCCG GACACCATCA GCTTCGAGCA GGCGGCAGCG
GTGATGCTCA AGGGTTTGAC CGTACAGTAC CTGCTGAAGC AGACCTATGA GGTGAAGGCG
GGTGATGTGA TCCTGTTCCA TGCCGCAGCC GGTGGTGTAG GGTCGCTGGC TTGCCAATGG
GCCAAGGCCC TGGGCGCCAA GCTGATCGGC ACCGTGAGCT CTGCCGAGAA GGCCGAACGG
GCCAAGGCGC TGGGGGCTTG GGCGACCATC GACTACAGCC GTGAAGATGT GGCCAAGCGC
GTACTGGAGC TGACCGACGG TAAGAAATGC CCGGTGGTGT ACGACGGCGT GGGTGCCGAC
ACCTGGCTGA CCTCGCTGGA CTGCCTGCGC CCGCGTGGGT TGATGGTGAG CTTTGGCAAT
GCTTCCGGTG CGGTGAGCGG GGTGAACCTG GGGATCCTGG CGCAGAAGGG CTCGCTGTAT
GTCACCCGGC CGACCTTGGC CACCTATGCC AACAATGCCG AGAACACTCA GGCCATGGCC
GATGACCTGT TTGCGATGAT TGCGAGCGGG AAGCTGGTTG TGGACATCCA GCAGCGGTAT
CCACTGAGCG AGGCGGCCAA GGCGCAGGCA GAGCTGTCGG CGCGGCGGAC TGTAGGATCG
ACTGTACTAA TCCCCTGA
|
|---|
| Protein sequence | MAKRIQFSQH GGPEVLQFVE FEPTPPGPQQ VRVRNHAIGL NFIDTYFRSG LYAPPSLPSG
LGTEAAGVVE AVGEGVSRLK VGDRVAHAGG PLGAYSEVHT LPEANLVKLP DTISFEQAAA
VMLKGLTVQY LLKQTYEVKA GDVILFHAAA GGVGSLACQW AKALGAKLIG TVSSAEKAER
AKALGAWATI DYSREDVAKR VLELTDGKKC PVVYDGVGAD TWLTSLDCLR PRGLMVSFGN
ASGAVSGVNL GILAQKGSLY VTRPTLATYA NNAENTQAMA DDLFAMIASG KLVVDIQQRY
PLSEAAKAQA ELSARRTVGS TVLIP
|
|---|
| |