Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pput_0073 |
Symbol | |
ID | 5191856 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida F1 |
Kingdom | Bacteria |
Replicon accession | NC_009512 |
Strand | + |
Start bp | 78671 |
End bp | 80290 |
Gene Length | 1620 bp |
Protein Length | 539 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 640584514 |
Product | general substrate transporter |
Protein accession | YP_001265432 |
Protein GI | 148545330 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2814] Arabinose efflux permease |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.000000648863 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 0.0860349 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCGGATT ACATCCAAGA GCAGGGTGCG GCGGCCAGCA GCTCCAGCCG CCGTGAAGAA CGCAAGATCA TTTTCGCGTC ATCCCTCGGG ACGGTTTTCG AGTGGTATGA CTTTTTTCTC TATGGTGCGC TGGCAGCGGT CATCAGCAAG CAGTTCTTCG CTGGCGTGAA CGATACCACC GCTTTCATCT TCGCCCTGAT GGCCTTTGCT GCGGGCTTTC TGGTGCGGCC GTTTGGCGCG CTGGTGTTCG GCCGCCTGGG TGACATGATC GGGCGCAAGT ACACCTTCCT GGTCACCATC GTGCTGATGG GCCTGTCCAC TTTCGCTGTG GGGTTGTTGC CCACCTACGC CAGCATCGGC ATCGCCGCAC CGATCATCCT GGTGATCCTG CGCATGCTTC AGGGGCTGGC GCTGGGCGGT GAGTATGGCG GTGCCGCCAC TTACGTGGCC GAGCATGCGC CGCCCGGCAA GCGTGGCTTG CATACCGGTT TCATCCAGTC CACCGCAACG TTGGGCCTGT TGTTGTCGCT GTTGGTGGTG CTGGGTAGCC GGTATGTCAG TGGCGACCAG TTCGAAACCT GGGGCTGGCG CTTGCCGTTC CTGCTGTCGA TCGTGCTGCT GGCGATCTCC ACCTGGATTC GCATGAGCAT GCACGAGTCG CCGGCATTTG TGAAAATGAA GGCTCAGGGC AAGGTCAGCA AGTCGCCCAT CCGTGAGTCA TTCACCTCCT GGCCAAACCT GAAAGTGGTG CTTACCGCCC TGTTCAGCAT CAACGCGGGG CAGGCTGTGA CCTTCTACAC GGCGCAGTTC TACGTTCTGT TCTTCATGAC CCAGATGCTG AAAATGGACT CGGCTCAGGC CAACACCCTG CTCATCATCA GCGTGGTGAT TGGCGCGCCG TTCTTCGTGT TTTTTGGCTG GTTGTCCGAC CGTATCGGCC GCAAGCCGAT CCTGATGCTC GGCCTGTTGC TGGCCACGGT ACTGTACTTC CCACTGTTCA AGGCGCTGAG CCACTACGCC AACCCGCAGA TCGACGCTGC CAGCCGTCAG GCGCCGATCG TGGTCACCGC CGACCCGCAA GGCTGCACAT TCCAGTTCGA CCCAGTGGGC AAGGCTCGTT TTGACAGCCC GTGCGACAAG GTCAAGACGT TCCTGGTCAA GCAGGGCCTG CCGTACAGCT CGGTTAGCGT GGCCGGCAGT GAAGTGGTGG TGAACATCGG TGACAAGACC ATCAATGGCT TTGATGAAAC CGCCATGCGC GCTGCAATCG AGCAGGCTGG TTATCCGGCC AAGGCCGACC CTGCGCAGGT CAACCAGGTA ATGGTGGTGG TGCTGATCGT GGCGATGATC CTGATCGCGA CCATGACCTA TGGTCCGTTG GCGGCGGTGA TGGTCGAGCT GTTCCCGACC CGCATCCGCT ACACCTCGAT GTCGCTGCCC TACCACATTG GTAATGGCTG GTTTGGTGGT TTCCTGCCTA CCGTATCGTT TGCGCTGGTG GTCTATACCG GGGATATCTT CTACGGGCTG TGGTACCCGG TGCTGGTGAC CGGGATCAGC CTGGTGGTTG GGATCTTCTG TCTGAGAGAA ACCAAGGATG TAGATATCGA CAAAGTCTGA
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Protein sequence | MSDYIQEQGA AASSSSRREE RKIIFASSLG TVFEWYDFFL YGALAAVISK QFFAGVNDTT AFIFALMAFA AGFLVRPFGA LVFGRLGDMI GRKYTFLVTI VLMGLSTFAV GLLPTYASIG IAAPIILVIL RMLQGLALGG EYGGAATYVA EHAPPGKRGL HTGFIQSTAT LGLLLSLLVV LGSRYVSGDQ FETWGWRLPF LLSIVLLAIS TWIRMSMHES PAFVKMKAQG KVSKSPIRES FTSWPNLKVV LTALFSINAG QAVTFYTAQF YVLFFMTQML KMDSAQANTL LIISVVIGAP FFVFFGWLSD RIGRKPILML GLLLATVLYF PLFKALSHYA NPQIDAASRQ APIVVTADPQ GCTFQFDPVG KARFDSPCDK VKTFLVKQGL PYSSVSVAGS EVVVNIGDKT INGFDETAMR AAIEQAGYPA KADPAQVNQV MVVVLIVAMI LIATMTYGPL AAVMVELFPT RIRYTSMSLP YHIGNGWFGG FLPTVSFALV VYTGDIFYGL WYPVLVTGIS LVVGIFCLRE TKDVDIDKV
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