Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pput_0072 |
Symbol | |
ID | 5191855 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida F1 |
Kingdom | Bacteria |
Replicon accession | NC_009512 |
Strand | + |
Start bp | 76927 |
End bp | 78573 |
Gene Length | 1647 bp |
Protein Length | 548 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 640584513 |
Product | glucose-methanol-choline oxidoreductase |
Protein accession | YP_001265431 |
Protein GI | 148545329 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG2303] Choline dehydrogenase and related flavoproteins |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.010293 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 0.0125106 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCATCAG CCGATTCTAT CTTCGACTAC GTGGTCGTAG GGGCCGGTCC CGCCGGATGC CTGCTGGCCA ATCGTTTGTC CGCCGACCCT TCCTGCCGCG TGCTGCTGCT GGAGGCGGGG GGCCGCGACA ATTATCCCTG GATCCACATC CCCGTCGGTT ACCTCTACTG CATCGGCAAC CCGCGCACAG ACTGGTGCTT CAAGACCGAG GCACAGCCTG GCCTCGGCGG TCGCGCTTTG GGTTATCCAA GGGGCAAGGT GCTAGGTGGC TGTTCGTCGA TCAACGGCAT GATCTACATG CGGGGCCAAG CCGCCGACTA TGACCATTGG GCCGCGCAAG GCAACGACGG CTGGGCGTGG AAAGATGTGT TACCCCTGTT CAAGGCCAGC GAAAACCACT TTGCCGGCGC CAGCGAGCAC CATGGCGCGG AGGGCGAATG GCGGGTCGAG CGCCAACGCT ACAGCTGGCC GATTCTTGAT GCTTTCCGTG ATGCCGCCGA GCAGAGTGGT ATTGGCAAGG TCGACGATTT CAACACCGGC GACAACCAGG GTTGTGGATA TTTTCAGGTC AACCAGCGCA GTGGGGTGCG CTGGAACGCT TCCAAAGCTT TCCTGCGGCC GATCAAGGAT CGCGCCAACC TCACTGTGCT GACCGGCGTG CAGGTTGACC AGGTACTGCT CGACAACACC CGCGCAAGGG CGGTGAAGGC GCTCTGGCAA GGGACCTGGC ATGAGTTTGC GGCGCGCCGC GAGATCATTC TCTGTGCTGG GGCGGTAGGT TCACCGGGCA TTCTCCAGCG CTCCGGCATC GGCCCGCGTC AGTTGCTGGA AAGCTTGGGC ATTGGTGTTC GCCACGATAT GCCAGGCGTT GGTGGCAACT TGCAGGACCA CCTGCAACTG CGCCTGATTT ACCAGATCCG CAACACCCGT ACCTTGAACC AGATGGCCAA CAGCCTGTGG GGCAAGATGG GCATGGGCCT GCGTTACCTC TACGACCGTA GCGGGCCGCT GGCCATGGCG CCGAGCCAGT TAGGCGCGTT CGTGCGTTCA AGCCCTGAAC AGGCCACCGC CAACCTTCAG TATCACGTGC AGCCGCTGTC ACTGGAACGC TTCGGTGAGC CGTTGCATCA GTTCCCGGCC TTTACGGCTT CGGTGTGCAA CTTGCGCCCG GTCAGTCGCG GGCGCATCGA CATCTGCAGC ACCGACATGA ACAGCACGCC GCTGATCGAC CCCAATTACC TCAGTGCTCC GCAGGACTTG CGGGTTGCTG CCGATGCCAT TCGCCTTACC CGGCGTATCG TCCAGGCCCC TGCCCTCGCT GCTTTCGAGC CCAAGGAATA TTTGCCGGGC CCAGCGCTGC AAAGCGAGGA AGAACTGTTC GAGGCCGCTG GCAAGATCGG CACCACCATC TTCCACCCGG TCGGTACCTG TCGCATGGGC AACGGTGCCA TGGACGTTGT GGATAACCAG CTGCGCGTGC ATGGCATCCC CGGTCTTCGT GTCGCTGATG CTTCGATCAT GCCGCAGATA ACGTCCGGCA ATACCTGTTC CCCCACCCTG ATGATCGCCG AAAAGGCGGC GCAACTGATC CTCAAAGGAG CGGCTACCCA GACCTACCTG AACGAAGACG CGTTACCGAC GCCCTGA
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Protein sequence | MPSADSIFDY VVVGAGPAGC LLANRLSADP SCRVLLLEAG GRDNYPWIHI PVGYLYCIGN PRTDWCFKTE AQPGLGGRAL GYPRGKVLGG CSSINGMIYM RGQAADYDHW AAQGNDGWAW KDVLPLFKAS ENHFAGASEH HGAEGEWRVE RQRYSWPILD AFRDAAEQSG IGKVDDFNTG DNQGCGYFQV NQRSGVRWNA SKAFLRPIKD RANLTVLTGV QVDQVLLDNT RARAVKALWQ GTWHEFAARR EIILCAGAVG SPGILQRSGI GPRQLLESLG IGVRHDMPGV GGNLQDHLQL RLIYQIRNTR TLNQMANSLW GKMGMGLRYL YDRSGPLAMA PSQLGAFVRS SPEQATANLQ YHVQPLSLER FGEPLHQFPA FTASVCNLRP VSRGRIDICS TDMNSTPLID PNYLSAPQDL RVAADAIRLT RRIVQAPALA AFEPKEYLPG PALQSEEELF EAAGKIGTTI FHPVGTCRMG NGAMDVVDNQ LRVHGIPGLR VADASIMPQI TSGNTCSPTL MIAEKAAQLI LKGAATQTYL NEDALPTP
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