| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_0067 |
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| Symbol | |
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| ID | 5192582 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | - |
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| Start bp | 71293 |
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| End bp | 72585 |
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| Gene Length | 1293 bp |
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| Protein Length | 430 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 640584508 |
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| Product | sigma-54 dependent trancsriptional regulator |
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| Protein accession | YP_001265426 |
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| Protein GI | 148545324 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.00197727 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCCTGAAG CCCATCCTCT CATCCTAGCT CTGGTTTCCT ACCTCGAGCA CGATGCCCTT
CCGACCATCG TGTTGGACAC CGACTACAAC ATCCTCGCCG CCAATGCGGC CTATCGCCGT
CAGTTTGGCC GGCATGATCA GGCCCCACTG GGCGAGAAGT GCCACAGGGT TTCGCACCAC
TACGCTGTGC CGTGCGACCA GGCTGGCGAA CATTGCCCGA TGCGCAAGGC GTGGGACAGC
AAGGTACCGG AGCGGGTATT GCACATTCAT CACACACCAC GTGGCCCGGA GCATGTGGAT
GTGGAGTTGC GGCCGATCCT GGATGAGCAG GGCAAGGTAG TGGCCTTTGT CGAACGCCTC
ACCACCATCA CCCTCGCTTC GGCCCAGCCA CAGGAGCAGG GGTTGGTCGG CCGCGCGCCA
ACCTTCAAGG CCGCGCTGGC CAGCCTGCAG CGTGCGGCAC CGGCGCAGAT CCCGGTGTTG
CTGCAGGGTG AATCAGGGAC CGGCAAGGAG CTGTTCGCCC GTGCAGTGCA CATGGGCAGC
CCCAGGGCCA ACGGCCCACT GGTGGTGGTC GACTGCACCG GCCTGACCGA GTCGTTGTTC
GAGAGTGAAC TGTTCGGCTA TGAGAAGGGC GCGTTCACCG GGGCGAATCA GCGCAAGATC
GGCTTGGCCG AGGCGGCGCA TGGCGGCACC TTGTTCCTCG ATGAAATTGG TGAAGTGCCG
CTGGCGATGC AGGTGAAGTT GCTGCGCCTG ATAGAGTCCG GGAGTTTCCG TCCCGTGGGC
AGCCTGCGCA CTGTGCATTC GGATTTCCGC CTGATATCGG CCACCCATAA ACCACTTAAA
CAAATGGTCG CGGATGGCTC CTTCCGAGAA GACCTGTATT ACCGCATCAG CGGCTTCCCG
ATTCGTCTGC CTGCATTGCG CGAACGGGTG GAAGATCTGC CGCTGCTCGC ACAGAGCCTG
CTGCAGCGCA TGGCCGGCCA GCCGACGCCC AGGCTGAGTG AAGACGCCTT GCAGCAACTT
GCATTGCATC CGTTTCCAGG CAATATCCGC GAACTGCGCA ACATTCTGGA ACGCGCGCGT
TTGTTTGCCG ATGACGGTGT GATCAGGCCA GAGCATTTAC CGGAAGACAC TGGACTGACT
GGCGCGGCTA AAGGAAGCGG CCGTCGCAAT GACCTGGGTG AGCTGGCGCA GGCGCTGGAG
CAGTTCAAAG GCTCGCGCAG TGAACTGGCC AGTCATCTTG GCATGAGTGA ACGCACGCTG
TATCGCCGCT TGAAAGCGCT CGGGCTGAAC TGA
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| Protein sequence | MPEAHPLILA LVSYLEHDAL PTIVLDTDYN ILAANAAYRR QFGRHDQAPL GEKCHRVSHH
YAVPCDQAGE HCPMRKAWDS KVPERVLHIH HTPRGPEHVD VELRPILDEQ GKVVAFVERL
TTITLASAQP QEQGLVGRAP TFKAALASLQ RAAPAQIPVL LQGESGTGKE LFARAVHMGS
PRANGPLVVV DCTGLTESLF ESELFGYEKG AFTGANQRKI GLAEAAHGGT LFLDEIGEVP
LAMQVKLLRL IESGSFRPVG SLRTVHSDFR LISATHKPLK QMVADGSFRE DLYYRISGFP
IRLPALRERV EDLPLLAQSL LQRMAGQPTP RLSEDALQQL ALHPFPGNIR ELRNILERAR
LFADDGVIRP EHLPEDTGLT GAAKGSGRRN DLGELAQALE QFKGSRSELA SHLGMSERTL
YRRLKALGLN
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