| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_0058 |
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| Symbol | |
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| ID | 5194382 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | - |
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| Start bp | 61375 |
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| End bp | 62625 |
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| Gene Length | 1251 bp |
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| Protein Length | 416 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 640584499 |
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| Product | RND family efflux transporter MFP subunit |
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| Protein accession | YP_001265417 |
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| Protein GI | 148545315 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR00999] Membrane Fusion Protein cluster 2 (function with RND porters)
[TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 0.712877 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.00429069 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGATAACA AACGCAAGAT CGCCCTCGCG GTAGCCGCTG TGGCAGCCCT CGGATTTGGC
AGCCTTGCCT GGAACAACAG TTCCGGACAG CAGGCCGCCA GTACTGCCGA GCATGGCGCT
AACGATGGCC ATGGCGACGA AAAGAAAGCC GCATCTGCCG CCAAAGAGGA AGGTGATGAG
GGCCATGGTG AAGAAGGCCA CAGCGAAGAG GGCGGTGAAG AAGAGGGCAA GCTGACGCTC
AGCGCTGAAC AGATCAAGGC CGCTGGTGTT GCCCTGGAAG CTGCAGCGCC TCGTGACCTC
GGTACCGTCG TGAGCTTCCC TGGCGAAATT CGCTTCGACG AAGATCGTAC TGCCCACGTG
GTTCCTCGTG TTCCTGGCGT TGTTGAGGCT GTCCAGGCCA ACCTGGGCGA GACGGTCAAG
AAAGGGCAAG TCCTCGCGGT AATCGCCAGC CAGCAGATCT CTGACCTGCG CAGCGAACAA
CAGGCCGCAC AGCGTCGCGT CGAACTGGCG CGTGTGACCT TCGAACGTGA GAAGCAACTG
TGGCAGGACA AGATCTCTGC AGAGCAAGAC TACCTCCAAG CACGCCAAGC GCTGCAAGAA
GCGGAGATCT CCTTGGCCAA CGCCAAGCAG AAGGTCGGCG CAATCGGTGC CTCGGTTAAC
TCCGTTGGCG GTAATCGTTA CGAGCTCCGC GCTCCCTTCG ACGCCGTGGT AGTGGAGAAA
CACCTGACCG TCGGCGAAGT CGTCAGCGAG GCGACCAACG CCTTCATCCT TTCCGACCTG
AATCAGGTCT GGGCGACCTT CGCAGTTCCG CCGACAGATC TGGGCAAGGT CACGACTGGC
CGTGCAGTGA AAGTCTCTTC GCCTGACATG AACGTCGAGG TCGAAGGGAA GGTGGGTTAT
GTCGGCAGCC TGCTGGGCGA GCAAAACCGT GCAGCTACTG TCCGCGTCAC CTTGACCAAC
CCCAACGGCG CCTGGCGTCC AGGCCTGTTC GTAAACATTG CGGTCACCTC CCAGACCGAT
CGAGTTGCCG TAGCGGTCCC TGAGCACGCT GTGCAGACCG TTGAAGACAA ACCTTCGGTA
TTCGTACGCA CCCCAGATGG CTTTGACACC CGCCCGGTAA AACTGGGTCG CCGCGACAAT
GGGTACGTGG AAATCATCGA CGGTATTGAA GCCGGCGCCC AGGTAGCAAC CAGTGGCAGC
TTCACACTCA AGTCCGAGCT CGGCAAAGCT TCTGCCGAAC ACGGTCACTG A
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| Protein sequence | MDNKRKIALA VAAVAALGFG SLAWNNSSGQ QAASTAEHGA NDGHGDEKKA ASAAKEEGDE
GHGEEGHSEE GGEEEGKLTL SAEQIKAAGV ALEAAAPRDL GTVVSFPGEI RFDEDRTAHV
VPRVPGVVEA VQANLGETVK KGQVLAVIAS QQISDLRSEQ QAAQRRVELA RVTFEREKQL
WQDKISAEQD YLQARQALQE AEISLANAKQ KVGAIGASVN SVGGNRYELR APFDAVVVEK
HLTVGEVVSE ATNAFILSDL NQVWATFAVP PTDLGKVTTG RAVKVSSPDM NVEVEGKVGY
VGSLLGEQNR AATVRVTLTN PNGAWRPGLF VNIAVTSQTD RVAVAVPEHA VQTVEDKPSV
FVRTPDGFDT RPVKLGRRDN GYVEIIDGIE AGAQVATSGS FTLKSELGKA SAEHGH
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