Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pput_0039 |
Symbol | |
ID | 5192893 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida F1 |
Kingdom | Bacteria |
Replicon accession | NC_009512 |
Strand | - |
Start bp | 39826 |
End bp | 41523 |
Gene Length | 1698 bp |
Protein Length | 565 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 640584480 |
Product | hypothetical protein |
Protein accession | YP_001265398 |
Protein GI | 148545296 |
COG category | [R] General function prediction only |
COG ID | [COG2194] Predicted membrane-associated, metal-dependent hydrolase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 0.328486 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 6 |
Fosmid unclonability p-value | 0.000197782 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGACACCTT CCAAATCCAT TGTTCACACC CTGTTAAGCA AATGGATCTT TGCTATTCGC AATGCGCGGC AGAAAGGCAT CAGTACTAAT TTGCTAATCG GCCTGGTGAC TTTTTGGTTA CTGCTATTCG CGAACGCTGA GCTCTGGAAC GTGCTCTGGA AGCTGGTATT CAAAACCGAT GAAGTGAACT GGCAGCTAGC GGCTAGCCTC CCAGTCATAG TATTCGCATG GGTGTTTACC GTTCTGAGCT TGCTGTCATG GGGGCGGCTG GCCAAACCCA TACTGTGCCT GGTACTGATC AGCGCGTCTT TTGCGAGTTA CTTCATGAAT GCCTACGGCA TCGTGATCGA TTACACAATG TTCACCAACG TTGTGGAGAC CGACGTCGCT GAGGCAACCG AGCTGCTGAA TTGGAAGCTC GGTCTTTGGG TCGCAATGGT TGGGGTGTTG CCCGTCTACC TGATTGCCCG GGTTCCCCTC CGGCGCAAGC CTTGGGCCAA AGCTTTGGTC AGCAGGTTCA TTGCTCTGTC GCTCGCTCTG TTGACCTTAT CTGGCATCGC GTTGAGTCAG TACCAGTCGT ATGCCTCCTT GCTGCGCAAC AATCGGGAGA TCCGGCTGAT TCTGGTACCT ACCAACTTGT TTGCGGCTGG CCATGGGTAC CTGAAGCGTC AGCTGGCCTC ACCTAAAACG CTGACGGCCA TTGGTACTGA TGCGGTAGTT AATCGACAGG GTGCGGCTCG TAAACCCAGG CTGCTGGTAC TGGCAGTAGG AGAGACCGCT CGCTCCGCCA ACTTCTCCCT CAACGGCTAC TCCCGTGAAA CGAATCCGGA ACTAGAAAAG CGAAATGTCA TTAGCTTCAC GAACGTGAGC TCCTGCGGTA CCGCTACCGC GGTCTCGCTG CCATGCATGT TCCTGGACGT GGGTAAGGCC CAGTACAAAG ATGGCTTGGC CAAGAGCCGA GAAGGGCTGC TCGACGTGCT TCAACGCGCT GGCATCAGTG TCATGTGGAC TGACAACAAC TCGGGGTGCA AAGGGGTCTG CGACAGGGTT CCCAACCACA AGGCTGCCTC TCACGCGGAT TCCCAACTGT GCACCAGCGA GGAGTGTAAG GACGGGGTGC TGCTCACGGA GATGCAAGAC TTCATCAAGC GCCAGGAAGG CGATGCTGTC CTGGTGCTCC ACTACAAAGG CAGTCACGGC CCGGCCTACT ACAAGCGCTA CCCCTCGCAA TTCAAGAAAT TCGCACCGGT GTGCGAGACC AACGAGCTCG ACAAATGTAA GCAGGAGGAG GTGGTCAATG CCTACGACAA CTCAATCCTC TACACCGATT ATGTGACTGC AAATCTCATC GATATCCTGG CGGCCAACAC CAAGTTCGAC ACTGCGCTGA TGTACGTTTC GGACCACGGC GAATCGCTGG GGGAGGGTGG GCTCTATCTA CACGGGCTGC CTTACGCGAT GGCTCCTGAC GAGCAAACAA AGGTGCCGTT GGTACTTTGG ATGTCTGACT CGCTCGCGAA GAGCGAAAAG GTCAACGTGG GTTGTTTGAA AGCTCAAACC ACGTCACCGC TGAGCCACGA CAACCTGTTC CACACCGTGC TCGGCATGAT GAACGTCCAG ACGTCTTCGT ATCGCTCAGC GCTGGATTTC ACTGCCCCTT GTAAGCCCTT TGTCGGAGGC TCTTATTCTG GCCTCTGA
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Protein sequence | MTPSKSIVHT LLSKWIFAIR NARQKGISTN LLIGLVTFWL LLFANAELWN VLWKLVFKTD EVNWQLAASL PVIVFAWVFT VLSLLSWGRL AKPILCLVLI SASFASYFMN AYGIVIDYTM FTNVVETDVA EATELLNWKL GLWVAMVGVL PVYLIARVPL RRKPWAKALV SRFIALSLAL LTLSGIALSQ YQSYASLLRN NREIRLILVP TNLFAAGHGY LKRQLASPKT LTAIGTDAVV NRQGAARKPR LLVLAVGETA RSANFSLNGY SRETNPELEK RNVISFTNVS SCGTATAVSL PCMFLDVGKA QYKDGLAKSR EGLLDVLQRA GISVMWTDNN SGCKGVCDRV PNHKAASHAD SQLCTSEECK DGVLLTEMQD FIKRQEGDAV LVLHYKGSHG PAYYKRYPSQ FKKFAPVCET NELDKCKQEE VVNAYDNSIL YTDYVTANLI DILAANTKFD TALMYVSDHG ESLGEGGLYL HGLPYAMAPD EQTKVPLVLW MSDSLAKSEK VNVGCLKAQT TSPLSHDNLF HTVLGMMNVQ TSSYRSALDF TAPCKPFVGG SYSGL
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