| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_0028 |
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| Symbol | |
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| ID | 5195145 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | - |
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| Start bp | 30096 |
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| End bp | 31118 |
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| Gene Length | 1023 bp |
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| Protein Length | 340 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 640584470 |
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| Product | YVTN beta-propeller repeat-containing protein |
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| Protein accession | YP_001265388 |
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| Protein GI | 148545286 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3391] Uncharacterized conserved protein |
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| TIGRFAM ID | [TIGR02276] 40-residue YVTN family beta-propeller repeat |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 0.828005 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.000046618 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGATGACTG CCAAGCGGTT TAGTTCTATG GCCTTGGGGA TATCCCTGCT CATCCCTCTG
GGGCTGGTCA TGGCAAACCC TACGGGTAAC GTCTACACGG CCAATGAACG GTCCGCTTCC
ATTAGCCAGG TAAATCTTGC GACAGGTGAT GTGAGCACGG TCGCCTTGCC GATCGCACCC
CACAACCTAC AGGTTTCGCC CGACGGCAGC TTGCTTCTGG TTGTTGGAGT GGCTGGACAT
GCGGGGCATT CGAGCGGTGA AAAGCCCGGT GGGCAGTTGC TGGTGTTCAG TACCAGCGCG
CTGGACAGGC CACCGTTCAG CTTCCCGGCA GGCGATCACC CGGCTCATGT GGTCACCGAC
GTCACCGGGC TGCGAGCTTT TGTGACCGAT TCCGCTGCCA ACCAGGTGCG AGTATTTGAC
CTTGAGCAGC GAATCGAGTT GCCCGGTATT CCAACTGGGC GTTATCCCCA TGGGCTGCGC
TTGAGCCCTG ATGGCCGGAC ACTCTATATC GCGAACATGA AGAGCGACAG CGTATCGCTT
ATCGATGTCG TCACACTCAA AGAAACCGCG CAGATTCCCG TGGGCAAAGG CCCTGTCCAG
GTCGGCTTTG CCCCTGACGG TCGCCTGGCA TTCGTCTCGC TCAGTGCGAC AAATCAGCTT
GGCATCATCG ACACGGCCAG ACGCAAGGTG ATCAGCAAGG TTGATGTCGG CCGCACGCCA
ATCCAGATGA TGGCCACCGT TGACGGTCGC CAGGTCTATG TCGCGAATCA GGGCAGTGGC
CAGAATCCGG ACGACCGAGT CTCCATCGTA GATCTCCAGA CGCGTAGCAG CCTGGGCACC
GTGACCACCG GCAAGGGTGC CCATGGTGTG GCCATCAGCA GCGACGGCGC TTATGTGTTT
GTCAGCAATA TTGAAGCGGG CACCGTATCT GTCATCGATA CGAGCAGCCG AAAGGTCGTT
GCTACCCATA AGGTTGGCGC CGGGCCAAAC GGGATCAGCT TCGAGCCGCC GAGTGCCCAA
TAA
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| Protein sequence | MMTAKRFSSM ALGISLLIPL GLVMANPTGN VYTANERSAS ISQVNLATGD VSTVALPIAP
HNLQVSPDGS LLLVVGVAGH AGHSSGEKPG GQLLVFSTSA LDRPPFSFPA GDHPAHVVTD
VTGLRAFVTD SAANQVRVFD LEQRIELPGI PTGRYPHGLR LSPDGRTLYI ANMKSDSVSL
IDVVTLKETA QIPVGKGPVQ VGFAPDGRLA FVSLSATNQL GIIDTARRKV ISKVDVGRTP
IQMMATVDGR QVYVANQGSG QNPDDRVSIV DLQTRSSLGT VTTGKGAHGV AISSDGAYVF
VSNIEAGTVS VIDTSSRKVV ATHKVGAGPN GISFEPPSAQ
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