| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_0022 |
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| Symbol | |
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| ID | 5191810 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | + |
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| Start bp | 24628 |
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| End bp | 27786 |
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| Gene Length | 3159 bp |
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| Protein Length | 1052 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 640584465 |
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| Product | CzcA family heavy metal efflux protein |
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| Protein accession | YP_001265383 |
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| Protein GI | 148545281 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG3696] Putative silver efflux pump |
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| TIGRFAM ID | [TIGR00914] heavy metal efflux pump (cobalt-zinc-cadmium) |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.00365409 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGATCGCGA ACCTGATTCG TTGGTCGGTT GGCAACCGCG TCCTGGTCCT GCTGGCAACA
CTGTTTGCCG TAGCTTGGGG CGTTTTCTCT CTGCGCAGTT TGCCGATCGA CGCGTTGCCT
GACCTGTCAG ATGTGCAGGT GATTATCCGC ACCTCCTACC CAGGGCAGGC ACCGCAGATC
GTGGAAAATC AGGTGACATA TCCCCTGACC ACCACAATGC TTTCCGTACC CGGAGCCAAG
ACAGTGCGGG GCTTTTCAGC ATTTGGAGAC AGCTTCGTAT ATGTGTTGTT TGAGGACGGC
ACAGATCTCT ATTGGGCGCG GTCCAGGGTG CTCGAATACC TAAGCCAGGT TCAGTCTCGA
TTACCGGCGT CCGCTAAGCC AGTGCTCGGA CCCGATGCCA CTGGTGTAGG CTGGATCTAC
CAGTATGCGC TGGTGGACCG CAGTGGTACC CATGACCTGG CACAGCTGCG CAGCCTTCAG
GACTGGTTCC TGCGCTTCGA GTTGAAAACT CTTCCGGACG TTGCCGAAGT GGCGACGATA
GGCGGGATGG TCAAGCAGTA CCAGGTAGTG CTCGATCCGC TGCGCATGGC CAGCTTGGGA
ATCACTCAAG TTGAGGTTTC GGACGCCATC GCCAAGGCCA ATCAGGAAAC CGGTGGCGGC
GTGCTCGAAC AAGGCGAAGC TGAGTTCATG GTAAGGGCTT CCGGCTATCT GAAGTCACTC
GATGATTTCC GAGCCATTCC CCTGCGCCTG GCTGCGAAGG GTATACCCGT AACACTGGGC
GATGTAGCCA CTGTACAGCT GGGCCCTGAG GCACGTCGCG GCATCGGCGA GCTTGATGGA
CAGGGCGAAG CGGTGGGCGG CGTAGTAATT CTGCGCAGTG GCAAGAATGC GAAAGATGCC
ATCGCTCACG TCAAATCCAA GCTTGAATCG CTGGAAAAAA GCCTGCCTGC CGGGGTCGAG
CTGGTCACTA CCTACGACCG TAGCCAGTTG ATCGATCGTG CTGTGGAAAA TCTGAGCCAG
AAGCTGATTG AAGAGTTCAT CGTGGTCGCA CTGGTGTGCG CTGCATTTCT TTGGCATCTG
CGCTCATCGT TGGTCGCCAT CGTCTCGCTT CCGGTTGGTG TCCTCATTGC CCTGATCGTC
ATGCGCCACC AGGGCATCAA CGCCAACATC ATGTCGCTTG GGGGCATAGC CATTGCAATC
GGTGCGATGG TGGACGCCGC TGTGGTGATG ATTGAGAACG CGCACAAACG GGTTGAGGCT
TGGCATACGT GGCACCCTGG AAAGTCGTTG CGTGGCGAAG ATCATTGGAA AGTGATGACT
GAGGCAGCAG TCGAGGTCGG GCCTGCGCTG TTCTTCAGCC TCATGATCAT TACGCTGTCC
TTCATACCGG TATTCACCTT GCAGGCTCAG GAGGGAAGGC TGTTTGCGCC CCTCGCATTC
ACCAAGACTT ATGCAATGGC AGCAGCAGCG GGCCTTTCGG TTACCCTGGT ACCCGTGCTG
ATGGGGTACT GGATTCGGGG TCGTTTACCG GCAGAAGAGC GCAACCCACT CAATCGAACC
CTGATACGGC TCTATCGCCC AGCATTGGAG ATCGTTCTAC GCCGGCCAAA GCTCACGTTG
GCGGGTGCAC TGTTGATTTT GCTCAGCAGT GTCTGGCCCC TGAGCCAGCT CGGCGGCGAA
TTCTTGCCGC CACTGGATGA AGGCGATTTG CTGTACATGC CGACTGCCCT GCCAGGTCTT
TCGGCGCAGA AAGCCTCTGA GCTTTTGCAA CGTACGGACC GGCTGATCCG AACGGTACCG
GAGGTCGCCA GTGTCTTCGG TAAAGCGGGC CGGGCTGAAT CAGCGACCGA CCCGGCCCCG
CTGGAGATGT TCGAGACGAC TGTCCGACTT AAACCGAAGG ATCAGTGGCG AGCAGGGATG
ACCACTGAGA AGCTGATCGA AGAGCTGGAC CGTACCGTGC AGGTACCTGG GCTAACCAAT
ATCTGGATCC CACCGATTCG AAACCGTATC GACATGCTCG CAACCGGTAT CAAAAGCCCG
ATCGGCGTAA AGGTTGCCGG CAGCAATTTG AATGAGATCG ACCGGGTGAC TCTGGCTATC
GAGAAGGTGG CCAAAACGGT TCCAGGGGTG ACTTCCGCCC TCGCCGAGCG ATTAACCGGT
GGACGCTACA TCGATCTGGA TATCGACCGC CAATTCGCAG CGCGTTACGG CCTGAACATT
GCTGATGTCC AAGCGATTGT TGCCGGCGCC GTTGGGGGCG AAAACATCGG CGAAACCGTA
GAAGGCCTGG CGCGATATCC CATCAGTGTT CGGTACCCAC GGGAGTGGCG TGACTCTGTT
GATGCCCTGC GGCAGCTACC GATTTACACC AGCCAAGGGG GGCGAATCAC ACTGGGAACC
GTGGCACGGG TGCGTATTGC GGACGGTCCA CCCATGCTCA AGAGTGAAAA CGCGCGCCCC
TCGGGCTGGG TGTATATCGA CGTGCGGAGA CGGGACCTGT CCTCCGTCGT TGCCGACCTG
CGCCGGCTAG TCGATCAGCA GGTGAAGCTC GATCCTGGCA TAAGCTTGAG CTATTCCGGG
CAGTTCGAAT ACCTGGAGCG CGCCAATGCG CGCTTAGCAT GGGTAGTACC GGCGACGCTG
GCCATTATTT TCGTCCTTCT CTACCTCACG TTTGGCCGCC TCGGTGAAGC GCTGCTGATC
ATGGCTACCT TGCCATTTGC GCTAACCGGC GGCGTATGGC TGCTGTACAT GATGGGCTAC
AACCTGTCGG TGGCCACGGG TGTCGGTTTT ATCGCCTTGG CTGGGGTCGC AGCAGAGTTT
GGAGTCATCA TGCTGATCTA CCTCAACAAT GCCTGGACTG AACGAAACGG CAACGGTACG
CAGGGGCAAC CTGCGCTTCT GGATGCTATC CGCGAAGGGG CCGTGCAGCG CATCCGCCCC
AAAGCCATGA CCGTAGCAGT GATCGTCGCA GGCTTGATGC CAATCCTCTG GAGTAGCGGT
ACCGGCAGCG AAGTCATGAG CCGGATCGCT GTACCCATGG TCGGCGGCAT GCTCACCGCG
CCTTTGCTCT CACTATTTGT AATCCCTGCG GCTTACTGGC TCGTCAGGCG CCGCGGACTC
GCTGTACACG ATAACCCCCA AACAGGAGTA ACCCGATGA
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| Protein sequence | MIANLIRWSV GNRVLVLLAT LFAVAWGVFS LRSLPIDALP DLSDVQVIIR TSYPGQAPQI
VENQVTYPLT TTMLSVPGAK TVRGFSAFGD SFVYVLFEDG TDLYWARSRV LEYLSQVQSR
LPASAKPVLG PDATGVGWIY QYALVDRSGT HDLAQLRSLQ DWFLRFELKT LPDVAEVATI
GGMVKQYQVV LDPLRMASLG ITQVEVSDAI AKANQETGGG VLEQGEAEFM VRASGYLKSL
DDFRAIPLRL AAKGIPVTLG DVATVQLGPE ARRGIGELDG QGEAVGGVVI LRSGKNAKDA
IAHVKSKLES LEKSLPAGVE LVTTYDRSQL IDRAVENLSQ KLIEEFIVVA LVCAAFLWHL
RSSLVAIVSL PVGVLIALIV MRHQGINANI MSLGGIAIAI GAMVDAAVVM IENAHKRVEA
WHTWHPGKSL RGEDHWKVMT EAAVEVGPAL FFSLMIITLS FIPVFTLQAQ EGRLFAPLAF
TKTYAMAAAA GLSVTLVPVL MGYWIRGRLP AEERNPLNRT LIRLYRPALE IVLRRPKLTL
AGALLILLSS VWPLSQLGGE FLPPLDEGDL LYMPTALPGL SAQKASELLQ RTDRLIRTVP
EVASVFGKAG RAESATDPAP LEMFETTVRL KPKDQWRAGM TTEKLIEELD RTVQVPGLTN
IWIPPIRNRI DMLATGIKSP IGVKVAGSNL NEIDRVTLAI EKVAKTVPGV TSALAERLTG
GRYIDLDIDR QFAARYGLNI ADVQAIVAGA VGGENIGETV EGLARYPISV RYPREWRDSV
DALRQLPIYT SQGGRITLGT VARVRIADGP PMLKSENARP SGWVYIDVRR RDLSSVVADL
RRLVDQQVKL DPGISLSYSG QFEYLERANA RLAWVVPATL AIIFVLLYLT FGRLGEALLI
MATLPFALTG GVWLLYMMGY NLSVATGVGF IALAGVAAEF GVIMLIYLNN AWTERNGNGT
QGQPALLDAI REGAVQRIRP KAMTVAVIVA GLMPILWSSG TGSEVMSRIA VPMVGGMLTA
PLLSLFVIPA AYWLVRRRGL AVHDNPQTGV TR
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