Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pput_0004 |
Symbol | gyrB |
ID | 5192243 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida F1 |
Kingdom | Bacteria |
Replicon accession | NC_009512 |
Strand | + |
Start bp | 4170 |
End bp | 6590 |
Gene Length | 2421 bp |
Protein Length | 806 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 640584447 |
Product | DNA gyrase subunit B |
Protein accession | YP_001265365 |
Protein GI | 148545263 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0187] Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit |
TIGRFAM ID | [TIGR01059] DNA gyrase, B subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.045671 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 0.178752 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCGAAA ATCAAACGTA CGACTCCTCC AGCATCAAGG TGCTGAAAGG TTTGGATGCC GTACGCAAGC GTCCCGGCAT GTACATTGGC GACACCGATG ATGGTAGTGG CCTGCACCAC ATGGTCTTCG AGGTGGTCGA CAACTCGATC GACGAAGCCC TCGCCGGTCA CTGCGATGAC ATCACTGTCA TCATCCATCC GGACGAATCT ATTAGTGTGC GCGACAACGG TCGCGGCATT CCGGTCGATG TGCATAAGGA AGAAGGCGTT TCCGCAGCCG AGGTCATCAT GACTGTGCTG CACGCCGGCG GTAAGTTCGA CGACAACTCC TACAAAGTAT CCGGCGGTCT GCACGGTGTA GGTGTGTCGG TTGTGAACGC CCTGTCCGAG AAGCTGGTTC TGACCGTTCG CCGTAGCGGC AAGATCTGGG AACAGACTTA CGTTCACGGT GTTCCACAAG CGCCCATGGC GGTTGTCGGT GACAGTGAAA CCACGGGTAC CCACATCCAC TTCAAGCCAT CGGCTGAAAC CTTCAAGAAC ATTCACTTCA GCTGGGACAT CCTGGCCAAG CGCATCCGCG AGCTGTCGTT CCTCAACTCG GGCGTTGGCA TTCTGCTGAA GGATGAGCGC AGCGGTAAGG AAGAGTTCTT CAAGTACGAA GGCGGTCTGC GTGCGTTCGT CGAGTACTTG AACACCAACA AGACGCCGGT CAACTCCCAG GTGTTCCACT TCAACGTTCA GCGTGACGAT GGCGTGGGTG TTGAAGTCGC CCTGCAATGG AACGACAGCT TCAACGAAAA CCTGCTGTGC TTTACCAACA ATATTCCGCA GCGAGATGGC GGCACCCACC TGGTGGGCTT CCGTTCCTCG CTGACCCGTA GCCTTAACAG CTACATCGAG CAGGAAGGCC TGGCCAAGAA GAACAAGGTG GCAACCACTG GCGACGACGC CCGTGAAGGC CTGACCGCAA TCATCTCGGT GAAGGTACCG GACCCGAAGT TCAGCTCGCA GACCAAGGAC AAGCTGGTCT CCTCGGAGGT GAAAACCGCC GTGGAACAGG AGATGAACAA GTACTTCGCC GATTTCCTCT TGGAAAACCC GAACGAGGCG AAGGCCGTCG TTGGCAAGAT GATCGACGCC GCTCGCGCCC GTGAAGCCGC CCGTAAAGCC CGTGAAATGA CCCGCCGTAA AGGTGCGCTG GATATCGCGG GTCTGCCGGG CAAACTGGCC GACTGCCAAG AGAAGGATCC TGCTCTCTCC GAACTGTACC TGGTGGAGGG TGACTCTGCG GGTGGCTCGG CCAAGCAAGG CCGCAACCGT CGTACCCAGG CGATCTTGCC GCTGAAGGGT AAAATCCTCA ACGTCGAGAA AGCGCGCTTC GACAAGATGA TTTCGTCCCA GGAAGTGGGC ACGCTGATCA CTGCGCTGGG CTGTGGTATC GGCCGTGAAG AGTACAACAT CGACAAACTG CGTTATCACA ACATCATCAT CATGACCGAT GCTGACGTTG ACGGTTCGCA CATCCGTACG CTGCTGCTGA CTTTCTTCTT CCGTCAGCTG CCAGAGCTGG TCGAGCGTGG CTACATCTAT ATTGCCCAGC CGCCGCTGTA CAAGGTGAAA CGAGGCAAGC AGGAGCAGTA CATCAAGGAC GATGAGGCCA TGGAAGAGTA CATGACCCAG TCGGCTCTGG AAGATGCCAG CCTGCACCTG GACGAATCGG CGCCAGCAGT TTCCGGCGTG CAGCTGGAAG CGCTGGTGAA TGAGTTCCGT AGTGTCATGA AGACTCTCAA GCGCCTGTCG CGTTTGTACC CGGAAGAGCT GACTGAGCAC TTCGTCTACC TGCCTGAGGT GACCCTGGAG CAGTTGGGTG ACCACGCAGT GATGCAGGCC TGGCTGGCCC AGTTCCAGGC GCGTCTGAAC TCCAGCCAGA AGTCTGGCCT GGCTTACAAC GCCAGCCTGC GTGAAGACAA AGAGCGCAAC GTATGGCTGC CTGAAGTGGA AATTACCTCT CACGGTCTGG CCAGCTATAT CACGTTCAAC CGCGATTTCT TCGGCAGCAA TGACTACCGT ACCGTAGTCA ACATTGGTGC CAAGCTTTCG AGCCTGTTGG GTGAAGGTGC GTACGTGCAG CGCGGTGAAC GCCGCAAGGC AATCGTCGAG TTCAAAGAGG GCCTGGATTG GCTGATGAAC GAGACCACCA AGCGCCATAC GATTCAGCGA TACAAAGGGC TGGGGGAGAT GAACCCGGAC CAACTGTGGG AAACCACCAT GGACCCGACC GTTCGCCGTA TGCTCAAGGT CACGATCGAA GATGCCATCG CCGCTGACCA GATCTTCAAC ACCCTGATGG GTGATGCGGT CGAGCCGCGT CGTGACTTCA TCGAAAGTAA CGCGCTGTCG GTGTCGAACC TGGACTTCTG A
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Protein sequence | MSENQTYDSS SIKVLKGLDA VRKRPGMYIG DTDDGSGLHH MVFEVVDNSI DEALAGHCDD ITVIIHPDES ISVRDNGRGI PVDVHKEEGV SAAEVIMTVL HAGGKFDDNS YKVSGGLHGV GVSVVNALSE KLVLTVRRSG KIWEQTYVHG VPQAPMAVVG DSETTGTHIH FKPSAETFKN IHFSWDILAK RIRELSFLNS GVGILLKDER SGKEEFFKYE GGLRAFVEYL NTNKTPVNSQ VFHFNVQRDD GVGVEVALQW NDSFNENLLC FTNNIPQRDG GTHLVGFRSS LTRSLNSYIE QEGLAKKNKV ATTGDDAREG LTAIISVKVP DPKFSSQTKD KLVSSEVKTA VEQEMNKYFA DFLLENPNEA KAVVGKMIDA ARAREAARKA REMTRRKGAL DIAGLPGKLA DCQEKDPALS ELYLVEGDSA GGSAKQGRNR RTQAILPLKG KILNVEKARF DKMISSQEVG TLITALGCGI GREEYNIDKL RYHNIIIMTD ADVDGSHIRT LLLTFFFRQL PELVERGYIY IAQPPLYKVK RGKQEQYIKD DEAMEEYMTQ SALEDASLHL DESAPAVSGV QLEALVNEFR SVMKTLKRLS RLYPEELTEH FVYLPEVTLE QLGDHAVMQA WLAQFQARLN SSQKSGLAYN ASLREDKERN VWLPEVEITS HGLASYITFN RDFFGSNDYR TVVNIGAKLS SLLGEGAYVQ RGERRKAIVE FKEGLDWLMN ETTKRHTIQR YKGLGEMNPD QLWETTMDPT VRRMLKVTIE DAIAADQIFN TLMGDAVEPR RDFIESNALS VSNLDF
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