| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_4798 |
|---|
| Symbol | |
|---|
| ID | 5197241 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | + |
|---|
| Start bp | 5282888 |
|---|
| End bp | 5283580 |
|---|
| Gene Length | 693 bp |
|---|
| Protein Length | 230 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 640584355 |
|---|
| Product | two component transcriptional regulator |
|---|
| Protein accession | YP_001265273 |
|---|
| Protein GI | 148557691 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 35 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.358461 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCCGGA AGATATTGCT GGTCGAGGAT GACGCCGCTA CCGCCGACTT CGTCGCGACC
GGGCTGTCCG AGCACGGCTT CGTCGTCGAT CGCGCCGACA ATGGCCGCGA CGGCCTGTTC
CACGCCACCG ACGGCAGCTA CGACTGCGTG ATCCTCGACC GGATGCTGCC GGGCATGGAC
GGGATGGCGG TGCTCGGCGC GATCCGCGCG GCGGGGATCG AGACGCCGGT GATCATCCTG
TCGGCGCTGG GCGCGGCCGA GGACCGGGTG AAAGGCCTCG AAGGCGGCTC CGACGACTAT
CTGACCAAGC CCTTCGCCTT CGCCGAACTG CTCGCGCGGG TCCGTCTGCT GATCCGCCAT
GGCCAGGGCC GGAGCGCCGC CGCGCCCGAG ACCCGGCTGG CCTGCGACGA CCTGGAGATG
GACCTGCTGT CGCGCAAGGT GCGGCGCGGC GGCCAGCCGA TCGAGTTGCA GCCGCGCGAG
TTCCGCCTGC TCGAATTCCT GCTCCGCCAT GCCGAGCAGG TGGTGACGCG GACGATGCTG
CTCGAAGGCG TGTGGGACTA TCATTTCGAT CCGGGCACCA ACGTCATCGA CGTCCATGTC
AGCCGGCTGC GCAAGAAGAT CGACGAGGGC CAGGCCCGGC CGCTGCTCCA CACGGTGCGT
GGATCGGGCT ATCGGCTGGG CCTCGACGGT TGA
|
|---|
| Protein sequence | MSRKILLVED DAATADFVAT GLSEHGFVVD RADNGRDGLF HATDGSYDCV ILDRMLPGMD
GMAVLGAIRA AGIETPVIIL SALGAAEDRV KGLEGGSDDY LTKPFAFAEL LARVRLLIRH
GQGRSAAAPE TRLACDDLEM DLLSRKVRRG GQPIELQPRE FRLLEFLLRH AEQVVTRTML
LEGVWDYHFD PGTNVIDVHV SRLRKKIDEG QARPLLHTVR GSGYRLGLDG
|
|---|
| |