| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_4791 |
|---|
| Symbol | |
|---|
| ID | 5197953 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | + |
|---|
| Start bp | 5275288 |
|---|
| End bp | 5276211 |
|---|
| Gene Length | 924 bp |
|---|
| Protein Length | 307 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 640584348 |
|---|
| Product | 2,3-dimethylmalate lyase |
|---|
| Protein accession | YP_001265266 |
|---|
| Protein GI | 148557684 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2513] PEP phosphonomutase and related enzymes |
|---|
| TIGRFAM ID | [TIGR02317] methylisocitrate lyase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 0.147274 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.246336 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGCCCTATC TGATCGCAGA CGAGCTTCCG CGCGAGAGCG CCGGCGCGCG CTTCCGCCGG
CTGCTCGCGC GCCCGAACAT CCTCCAGCTT CCCGGCGCGC ACAACGGCCA GGCGGCGCTC
CAGGCGAAGG CGGCGGGCTT CGAGGGGCTC TATCTGTCGG GCGCGGCGAT GACGGCGTCG
ATGGGGCTGC CCGACCTCGG CATCATCACC GTCGACGAGG TCGCCTTCTT CATCCGCCAG
ATCGTCCGCG CGTCGGGTCT GCCGCTGCTG GTCGACGGCG ATACCGGCTA TGGCGAGGCG
CTCAACGTCA TGCACATGGT CCGCGCCTTC GAGGATGCGG GGGCGGGGGC CGTCCATCTG
GAGGATCAGA TCCTCCCCAA GAAATGCGGC CACCTCAACG GCAAGAAGCT GGCCGACGCG
CATGACATGG CGGCCAAGGT CGCCGCCGCG AAGAAGGCGG CGCGCGACAT CGTGATCGTC
GCGCGGACCG ACGCGGCCGG GGTCGAAGGG TTCGACGCGG CGGTCGATCG GGCGAGGCTT
TATGTCGAGG CCGGCGCCGA CGCGATCTTC CCCGAGGCGC TGAACACGCG CGAGATGTTC
GAGAGGTTCG CGCGGGCGAT GCCCGGCGTC CCGCTGCTCG CCAACATGAC CGAGTTCGGC
CGGACGCCGT TCTTCACCGC GTCCGAGTTC GAGGCGATGG GCTATCGCAT GGTGATCTGG
CCGGTCTCGT CGCTGCGCGT CGCCAACAAG GCGCAGGCCA GACTCTACGC CGCGATCCGG
CGTGACGGCG GCACCCACGC CATGGTCGAC GAGATGCAGA CCCGCGCCGA GCTCTACGAG
ACGATCGGCC TGCACGCCTA TGAGGCGCTC GACGCCTCGA TCGTCAGGAC GATCGTGCCG
GAAGCGATCC CGCAGGCGGG CTGA
|
|---|
| Protein sequence | MPYLIADELP RESAGARFRR LLARPNILQL PGAHNGQAAL QAKAAGFEGL YLSGAAMTAS
MGLPDLGIIT VDEVAFFIRQ IVRASGLPLL VDGDTGYGEA LNVMHMVRAF EDAGAGAVHL
EDQILPKKCG HLNGKKLADA HDMAAKVAAA KKAARDIVIV ARTDAAGVEG FDAAVDRARL
YVEAGADAIF PEALNTREMF ERFARAMPGV PLLANMTEFG RTPFFTASEF EAMGYRMVIW
PVSSLRVANK AQARLYAAIR RDGGTHAMVD EMQTRAELYE TIGLHAYEAL DASIVRTIVP
EAIPQAG
|
|---|
| |