| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_4656 |
|---|
| Symbol | |
|---|
| ID | 5198461 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | - |
|---|
| Start bp | 5122988 |
|---|
| End bp | 5124841 |
|---|
| Gene Length | 1854 bp |
|---|
| Protein Length | 617 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 640584210 |
|---|
| Product | dihydroxy-acid dehydratase |
|---|
| Protein accession | YP_001265131 |
|---|
| Protein GI | 148557549 |
|---|
| COG category | [E] Amino acid transport and metabolism
[G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0129] Dihydroxyacid dehydratase/phosphogluconate dehydratase |
|---|
| TIGRFAM ID | [TIGR00110] dihydroxy-acid dehydratase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 37 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.972576 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCCGCTT ATCGTTCCCG CACCAGCACC CATGGCCGCA ACATGGCGGG CGCGCGCGGC
CTGTGGCGCG CCACCGGCAT GACCGACGAG GATTTCGGCA AGCCGATCAT CGCGATCGCC
AACAGCTTCA CCCAGTTCGT GCCGGGCCAT GTCCACCTCA AGGACCTCGG CCAGCTGGTC
GCGCGGGAGA TCGAGGCGGC GGGCGGCGTC GCCAAGGAAT TCAACACGAT CGCGGTCGAC
GACGGCATCG CCATGGGCCA TGACGGCATG CTCTATTCGC TGCCCAGCCG CGACCTGATC
GCCGACAGCG TCGAATATAT GGTCAACGCG CATTGCGCCG ACGCGCTGCT CTGCATCTCC
AACTGCGACA AGATCACGCC GGGCATGCTG ATGGCGGCGA TGCGCCTCAA CATCCCCGTC
ATCTTCGTAT CGGGCGGGCC GATGGAGGCC GGCAAGGTCG ACATTCGCGG CCAGACCCTC
GCGGTCGACC TGATCGACGC GATGATCGTC GCGGCCGACG AGAGCTACAC CGACGAGGAG
GTGAAGGTGA TCGAGCGGTC GGCCTGCCCG ACCTGCGGCT CCTGCTCGGG CATGTTCACC
GCCAACAGCA TGAACTGCCT GACCGAGGCG CTGGGCCTGT CGCTGCCCGG CAACGGATCG
GTCCTCGCCA CCCATGCCGA CCGCGAGAAG CTGTTCCGCG AGGCCGGGCA CACGATCGTC
GACCTCGCCC GCCGCTGGTA CGAGCAGGAG GACGCCACCG CCCTGCCGCG CAGCATCGCC
AGCTTCGCCG CCTTCGAGAA TGCGATGAGC CTCGACATCG CGATGGGCGG ATCGACCAAC
ACCGTGCTCC ACCTGCTCGC CGCCGCGCAT GAGGGCGAAG TGCCCTTCAC CATGGCCGAT
ATCGACCGGC TGTCGCGCCG CGTCCCCTGC CTGTGCAAGG TCGCGCCCGC CAAGCAGGAC
GTCCACATGG AGGACGTCCA CCGCGCCGGC GGGATCATGG CGATCCTCGG CCAACTCGAC
AAGGCCGGGC TGATCGACGC CGGCCTGCCG ACCGTCCACG CGCCGACGCT GGGCGCGGCG
CTCGACCGCT GGGACGTCAG CCGCACCGAG AGCGAGAGCG TGCGCGACTT CTACAAGGCC
GCCCCCGGCG GCGTGCGCAC CACGGTGGCG TTCAGCCAGA ACAACCGCTG GAAGGAGCTC
GACCTCGACC GCGAGGCGGG CGTGATCCGC AGCGCGGAGC AGCCCTTCTC CAGGGATGGC
GGCCTCGCCG TGCTGTTCGG CAACCTCGCC CCCGAGGGCT GCATCGTCAA GACGGCGGGC
GTCGACGAGA GCGTGCTGAC CTTCCACGGC ACCGCGCGCG TCTATGAGAG CCAGGACGCG
GCGGTGGCCG GCATCCTCGG CAACGAGGTG AAGGCGGGCG ACGTGGTGGT GATCCGCTAT
GAGGGGCCGA AGGGCGGACC GGGCATGCAG GAGATGCTCT ACCCGACCAG CTATCTGAAG
TCGAAAGGCC TGGGCAAGGC CTGCGCGCTG ATCACCGACG GCCGCTTCTC GGGCGGCACG
TCGGGCCTGT CGATCGGCCA TGTCTCGCCC GAGGCGGCCG AGGGCGGCCT GATCGCGCTG
GTCCAGACCG GCGACCCGAT CCTGATCGAC ATCCCCAATC GCGGCATCCG CCTCGACGTC
GACGACGCGA CGCTGGCCGC CCGGCAGGAG GAGATGGTCG CGCGCGGCAA GAAGGCGTGG
AAGCCGTTCG GCCGCAAGCG CAACGTCTCC CCGGCCCTGC GCGCCTACGC CGCCCTCACC
ACCAACGCCG CGCGCGGCGC GGTCCGCGAC GTGAGCCAGG TCGAGGGGGA GTAG
|
|---|
| Protein sequence | MPAYRSRTST HGRNMAGARG LWRATGMTDE DFGKPIIAIA NSFTQFVPGH VHLKDLGQLV
AREIEAAGGV AKEFNTIAVD DGIAMGHDGM LYSLPSRDLI ADSVEYMVNA HCADALLCIS
NCDKITPGML MAAMRLNIPV IFVSGGPMEA GKVDIRGQTL AVDLIDAMIV AADESYTDEE
VKVIERSACP TCGSCSGMFT ANSMNCLTEA LGLSLPGNGS VLATHADREK LFREAGHTIV
DLARRWYEQE DATALPRSIA SFAAFENAMS LDIAMGGSTN TVLHLLAAAH EGEVPFTMAD
IDRLSRRVPC LCKVAPAKQD VHMEDVHRAG GIMAILGQLD KAGLIDAGLP TVHAPTLGAA
LDRWDVSRTE SESVRDFYKA APGGVRTTVA FSQNNRWKEL DLDREAGVIR SAEQPFSRDG
GLAVLFGNLA PEGCIVKTAG VDESVLTFHG TARVYESQDA AVAGILGNEV KAGDVVVIRY
EGPKGGPGMQ EMLYPTSYLK SKGLGKACAL ITDGRFSGGT SGLSIGHVSP EAAEGGLIAL
VQTGDPILID IPNRGIRLDV DDATLAARQE EMVARGKKAW KPFGRKRNVS PALRAYAALT
TNAARGAVRD VSQVEGE
|
|---|
| |