| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_4640 |
|---|
| Symbol | |
|---|
| ID | 5196699 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | - |
|---|
| Start bp | 5106886 |
|---|
| End bp | 5108805 |
|---|
| Gene Length | 1920 bp |
|---|
| Protein Length | 639 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 640584195 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001265116 |
|---|
| Protein GI | 148557534 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG4805] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.800021 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCACCAC ATGCCGCAGC ATCTATGGAA TCATCTCGCT TCCCCGCCCC CTTGCCCGCC
CTCTCCCGCC GCCGCTTCGC GCAGTTGCTC GGCGCCACCG CCATCGCCCC GGCGCTGCCC
GCCGCGCTCG CGGCCCAGAC CGCCCCGCCG CCCAAGCGAC CGGGTCCCTG CCCGATCACC
ACGCCGGTCG ACGCGATCAC GCTCAAGCTG CTGCGCCACA CGCCCGAGAT CGCCACCTAT
GGCGGGGTCG CGGGGTCGGC GGCGGGCGGC CCCTATGCGC GCTCGATGGA CGATTATTCG
CCCGAGGGGG AGGAGGCCTG GCGCACCGCG CTGGGCGAGG CGGGCATCGC CATCGAACAG
ATCGATTGCG AGAACGACCG GCTCGGCCAG CTCCGGCTGA AGATCGCCGC GGCGGTGATC
GAGAACGGCA CGCGCAGCGC CGCGATCGGC TATGGCCGGC CCAACCCCTT CTGGTTCTCG
GGGCACGAGC CCTATGTCAT CAACCAGATC TCCGGACCGG TGGTGAACAC CCCGAACGTG
ATGATCGCGC AGCAGCCGCT GTCCTCGCCG ATCGAGGTCG ACGCCTGGAT CGAGAAGCTC
GACGGCTTCG CGACGGGCTT CGCCGGGGTG GTCGAGAAGT CGCGGGCGGA CGAGGCGATC
GGCTGCATCC CGCCCCGCGC GCTGCTCGAA AAGACGCTGC CGGTGGTCGA GAGCTTCCTG
GCCGGGCCGG CCGACCGGCA TCCGATGATC GTCGCGCTGC GCGACCGGAT GGCGACCGCC
GGGCTCGACG CGCGCACCCG CGACGCCGCC GAGCAGCGGG CGATCGCCGC GCTGGAGAAA
CGCGCCCGTC CCGCCTTCGG CCAGTTGCGC GAGCGGGTGC GCGACCTGCT ACCCGAGGGC
CGCGAGGAGG CCGGGGTCTG GGCCCAGCCC GACGGCGAGG CGCTCTACGC CGCCAATGTC
CGCTCGGTCG GCGACAGCGA CGAGACGCCC GAGGAGATCC ACCGCATCGG CCTCGAGCAG
GTCAAGCTCG TCACCGCGCG GATCGAGGCG CGGCTTCGCC AGCTCGGCTT CTCCAGGGGA
TCGCTGCGCG ACCGGCTCGA CGCGCTCGCC GACGACCCGA AGCAGCGTTT CCCCGACACG
CCCGCCGGGC GCGAGGAGGT GCTCGACTAT CTGCGCAAGC TGGTTGCGGG CATGGAGGCG
CGCCAGCACG AATTCCTGCC CCGCGCGATG ATCCCCGCCC AGCGGCTGGA GATCCGCGCG
GTGCCGGAGG CGACCCAGGA TTCGGCGCCG GGCGGCTATT ATGACGGCCC GTCGCTCGAC
GGCTCGCGCC CCGGCATCTA CTGGATCAAC CTGCGCGACA TGGCCGGCGT CCACCGCTAC
GGCCTACCGA CGCTCAGCTA TCATGAGGGC GTGCCCGGCC ACCATACCCA GGGCGCCACC
CTGCTCGCGC TGCCGCAGGC GCCGCTGATG CTGCGCATCG CCAGCTTCAA CGCCTATCAG
GAAGGCTGGG GCCTCTATGC CGAGCGGCTG GCGGCCGAGA TGGGCCTCTA TGCGCATGAT
CCGGCGGGCG ACGTCGGACG GCTCGCCGAC GACCTGTTCC GCTGCGTCCG CCTCGTCGTC
GACACCGGCA TGCACCAGCT CAAATGGAGC CGCGAGCAGG CGATCGCCTA TATGGAGGCG
AACAGCGGAT CGCCGATGAG CGAGATCGTC GCCGAGATCG AGCGCTACAT GGCGTGGCCG
GGCCAGGCGC TCGGCTACAA GCTCGGCCAG CTCCGCCTGC TGGCGATGCG CGACAGGCTC
AAGGCGCGGA TGGGAAGGCG CTTCGACCTG CGCCAGTTCC ACGCGCTCGT CCTCGGCAAC
GGCGCGATGC CGCTCGACCT GCTCGAAACG GTGGTGCTGC CGCCGGTCGG CAAGCGGTAG
|
|---|
| Protein sequence | MSPHAAASME SSRFPAPLPA LSRRRFAQLL GATAIAPALP AALAAQTAPP PKRPGPCPIT
TPVDAITLKL LRHTPEIATY GGVAGSAAGG PYARSMDDYS PEGEEAWRTA LGEAGIAIEQ
IDCENDRLGQ LRLKIAAAVI ENGTRSAAIG YGRPNPFWFS GHEPYVINQI SGPVVNTPNV
MIAQQPLSSP IEVDAWIEKL DGFATGFAGV VEKSRADEAI GCIPPRALLE KTLPVVESFL
AGPADRHPMI VALRDRMATA GLDARTRDAA EQRAIAALEK RARPAFGQLR ERVRDLLPEG
REEAGVWAQP DGEALYAANV RSVGDSDETP EEIHRIGLEQ VKLVTARIEA RLRQLGFSRG
SLRDRLDALA DDPKQRFPDT PAGREEVLDY LRKLVAGMEA RQHEFLPRAM IPAQRLEIRA
VPEATQDSAP GGYYDGPSLD GSRPGIYWIN LRDMAGVHRY GLPTLSYHEG VPGHHTQGAT
LLALPQAPLM LRIASFNAYQ EGWGLYAERL AAEMGLYAHD PAGDVGRLAD DLFRCVRLVV
DTGMHQLKWS REQAIAYMEA NSGSPMSEIV AEIERYMAWP GQALGYKLGQ LRLLAMRDRL
KARMGRRFDL RQFHALVLGN GAMPLDLLET VVLPPVGKR
|
|---|
| |