Gene Swit_4608 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwit_4608 
Symbol 
ID5199078 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSphingomonas wittichii RW1 
KingdomBacteria 
Replicon accessionNC_009511 
Strand
Start bp5065374 
End bp5067026 
Gene Length1653 bp 
Protein Length550 aa 
Translation table11 
GC content71% 
IMG OID640584163 
Productcrotonobetaine/carnitine-CoA ligase 
Protein accessionYP_001265084 
Protein GI148557502 
COG category[Q] Secondary metabolites biosynthesis, transport and catabolism
[I] Lipid transport and metabolism 
COG ID[COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCTGTTC ATGAAGACGC CGCGCAGCCT GTCATGGCGG GTAGCGAGGT TCTTGCCGAT 
CGATCGATCC CCGCCCTGCT GACGCGGCGG GCGGCGCTGG GCGACAAGCC TCTGGTCATC
TTCGGCGACA CGCGCTTCGG CTATGGCGAG ATGGCGGCGC GCGCGGCGGC GGCGGGCGCG
CTGCTGCGCG ATGCCGGCGT GGCGCGGGGC GACCGGGTCG CGATCTTCTG CGGCAACCGG
ATCGCCTTTC TCGACCTGTT CCTCGGCTGC GCCTGGATCG GCGCGGTGGC GGTGCCGATC
AACCATTTCG CGCGCGGGCC GCAACTCCAG CACATATTGG GCAACAGCGG CGCGCGCCTG
ATCGCCGCCG ATGCCGACGG CGCCGCCGCG CTCGACCATG TCGATCCCTC CGCGCTGGCG
CTGGCCGAGG TCTGGCTGCT CGACGGCGAG AATAGCCCGC CCCCCGCCGC CGGCCATTGG
CCCGCGGCCT GGAAGGTCGG CCCGATGCCG CCGCTGGACG CGGGCGCCGA CGCCGCATCG
CCGCGCCCCG GCGACATGGC CGCGATCATC TACACATCAG GCACCACCGG CCCCTCCAAG
GGGGTCTGCT GCCCGCATGC GCAATTCTAC TGGTGGGGCG CCCATTCGGT CGACCTGCTG
GAGATCGAGG CGCGCGACGT GCTGCTGACC ACCCTGCCCC TGTTCCACGT CAACGCGCTC
GCCACCTTCT TCTCGGCGCT GCTCAGCGGG GCGACGCTCG TCGTCCTCGA ACGCTTCTCG
GCGAGCGGCT TCACCGATGC GCTGCGCAAG CACCGGGCGA CCGTCACCTA TCTGCTCGGC
GCGATGGTCT CGATCCTGCA GTCGACCCCG CCGTCCGACC GCGACAACGA CCATCCGACG
ACGCGCGCGC TGGCCCCCGG CGTCTCGGCC GCGCTCGCCG CCGACTTCCG CGCGCGCTTC
GGCATCGGCG CGGTCGACGG CTATGGATCG ACCGAGACCA ATTTCGTCAT CGGCGACCGG
CTGGCCGACC AGAAGCCGGG CAGCATGGGT CGCGTCCGTC CCGGCTTCAC GGCGCGCGTG
GTCGACGAGG AGGACAATGA ACTGCCGCCG GGCGTGCCGG GCGAACTGGT CGTGCGCGCC
GACGAGCCCT TCGCGATGGC GACCGGCTAT TTCGAGATGG CGTCGGCGAC CGTCGCCGCC
TGGCGCAACC TGTGGCTCCA CACCGGCGAC CGCGTCGTCC GCGACGCCGA CGGCCGCTTC
ACCTTCATGG ACCGGATCAA GGACGCGATC CGGCGGCGTG GCGAGAACAT CTCCGCCTAT
GAGGTCGAGC AGGTGCTGGC GAGCCATCCG GCGGTCGCCC AGGCCGCGGT CTTCCCGGTC
CGTTCCGAAC TGACCGAGGA CGAGGTGATG GCGGCGGTGG TGCTGAAAGA AGGGATGGCC
CTCGATCCGG TCGCGCTGCT CGATTATTGC AAGCCGCGGA TGAGCTATTT CTCGGTGCCG
CGCTATGTGC TGTTCGCGGA CCGGCTGCCG ATGACGGAGA ATGGCAAGGT GCAGAAATAC
CGGCTGCGCG AGATCGGGGT GACGCCCGAG ACATGGGACC GGGAGGCGGC CGGCTACACC
GTCGGTCGCG GCGGCGGGGC GCGGCGCGCG TGA
 
Protein sequence
MPVHEDAAQP VMAGSEVLAD RSIPALLTRR AALGDKPLVI FGDTRFGYGE MAARAAAAGA 
LLRDAGVARG DRVAIFCGNR IAFLDLFLGC AWIGAVAVPI NHFARGPQLQ HILGNSGARL
IAADADGAAA LDHVDPSALA LAEVWLLDGE NSPPPAAGHW PAAWKVGPMP PLDAGADAAS
PRPGDMAAII YTSGTTGPSK GVCCPHAQFY WWGAHSVDLL EIEARDVLLT TLPLFHVNAL
ATFFSALLSG ATLVVLERFS ASGFTDALRK HRATVTYLLG AMVSILQSTP PSDRDNDHPT
TRALAPGVSA ALAADFRARF GIGAVDGYGS TETNFVIGDR LADQKPGSMG RVRPGFTARV
VDEEDNELPP GVPGELVVRA DEPFAMATGY FEMASATVAA WRNLWLHTGD RVVRDADGRF
TFMDRIKDAI RRRGENISAY EVEQVLASHP AVAQAAVFPV RSELTEDEVM AAVVLKEGMA
LDPVALLDYC KPRMSYFSVP RYVLFADRLP MTENGKVQKY RLREIGVTPE TWDREAAGYT
VGRGGGARRA