Gene Swit_4555 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwit_4555 
Symbol 
ID5196774 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSphingomonas wittichii RW1 
KingdomBacteria 
Replicon accessionNC_009511 
Strand
Start bp5013125 
End bp5014510 
Gene Length1386 bp 
Protein Length461 aa 
Translation table11 
GC content66% 
IMG OID640584108 
Productphosphoglycolate phosphatase 
Protein accessionYP_001265031 
Protein GI148557449 
COG category[R] General function prediction only 
COG ID[COG0546] Predicted phosphatases 
TIGRFAM ID[TIGR01449] 2-phosphoglycolate phosphatase, prokaryotic
[TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
[TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value0.82365 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.133597 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCAGCCG ATTTTCCCTT CGACGTCGTC GCCTTCGATC TCGACGGCAC CCTTGCCGAC 
ACCGCGCCCG ACCTCACCGC CGCGCTCAAC CACGCGCTGG GCGTGCTGGG ACGGCCGCCG
GTCCCGGCCG AGGACGTCCG CCACATGGTC GGCCATGGCG CCCGCGCGCT GCTCCAGAAG
GGGCTCTCCG CGACCGGCGA GATGACCGAC GAACTGGTCG AGCGGGGCTT CCCTATCTTC
ATCGACTATT ATCTCGACCA TATCGCCGAC GGGACGCGGA TCTTCCCCGG CCTGAACGCC
GCGCTCGACC GGCTCGCGGC GCGCGGGGTC AAGCTCGCGG TCTGCACCAA CAAGGCCGAG
CATCTGGCGC GGCGCTGCAT CGACGAACTC GGCTGGAGCG ACCGCTTCGA CGCGCTGGTG
GGCGGCGACA CGCTGCCCGT CCGCAAACCC GACCCCGCGC CGCTGTTCGA GGCGATCGCG
CGGTGCGGCG GGGGCAGGGC GGCCTATGTC GGCGACTCGA TCACCGATAC CGATACGGGC
CGCAACGCCA ATGTCCCGAC GGTCGCGGTC AGCTTCGGCT TCTCCGACCG ACCGGTCGAG
CAGCTCGACG CCGCAGCGCT GATCGACCAT TTCGATGATC TGATCCCGAC GCTCGAACGG
CTCGGCCAGG CGCCCAACTG GCTGGGCTGT CCGATCTGCG GATCATCCGC CTTCGTCGCG
AACCACAAGG GCGGCTATGT CCAGTGCGAC GGCTGCGACT CGAACGAGCG AGCTCGGCTG
CTATGGATGA CGCTCGTCAG GGAAGGGCTG CTGACGCCGG GCAAGCGTGT GCTTCACATC
GCTCCCGAGC TCTCGCTCGC GGAACGGTTT CATGCGATCT GGGGCGACGG CTATGAGCCG
GTCGACATCG ATCCGGCGAA CTACGCCTTC GCCCCGAACA TCCGGAGGAT CGATCTGGTC
GAGGATGCGG CGAAGCTGCC TTCGGACCAT TATGACCTGA TTATCCATTC GCACGTGATG
GAACATATTC CCTGCAATAT CACAGCGATA CTCTATCATC TTCATAGGTC GCTGAAGCCT
TCGGGCAAGC AGGTCTGTTG TGTGCCGATT ATCCGCGACG GCCATTATGC CGAGGATCTG
GGGCTGATCG CGCCCGAGGA CGCCGTCGTT CGCTTCGGGC AGGACGATCA TGTCCGCACC
TTCGGCGGCC GGGACATCCA GCGGACATTG GGCATGCTCT TCGCGCTGCC CGAGACCTAT
GACCTCACCC GCAGCTTCGA CGAGGCGACG CTGATCGCCA ACAACATCCC TCGGATCAAC
TGGCGCGGCT GGTCGCCCAA TTCGGTGCTG GTGCTCGAAA AGGACGACCT GCTGCTCAAG
CCCTGA
 
Protein sequence
MPADFPFDVV AFDLDGTLAD TAPDLTAALN HALGVLGRPP VPAEDVRHMV GHGARALLQK 
GLSATGEMTD ELVERGFPIF IDYYLDHIAD GTRIFPGLNA ALDRLAARGV KLAVCTNKAE
HLARRCIDEL GWSDRFDALV GGDTLPVRKP DPAPLFEAIA RCGGGRAAYV GDSITDTDTG
RNANVPTVAV SFGFSDRPVE QLDAAALIDH FDDLIPTLER LGQAPNWLGC PICGSSAFVA
NHKGGYVQCD GCDSNERARL LWMTLVREGL LTPGKRVLHI APELSLAERF HAIWGDGYEP
VDIDPANYAF APNIRRIDLV EDAAKLPSDH YDLIIHSHVM EHIPCNITAI LYHLHRSLKP
SGKQVCCVPI IRDGHYAEDL GLIAPEDAVV RFGQDDHVRT FGGRDIQRTL GMLFALPETY
DLTRSFDEAT LIANNIPRIN WRGWSPNSVL VLEKDDLLLK P