Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swit_4512 |
Symbol | |
ID | 5200177 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingomonas wittichii RW1 |
Kingdom | Bacteria |
Replicon accession | NC_009511 |
Strand | + |
Start bp | 4957761 |
End bp | 4959332 |
Gene Length | 1572 bp |
Protein Length | 523 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 640584065 |
Product | EmrB/QacA family drug resistance transporter |
Protein accession | YP_001264988 |
Protein GI | 148557406 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2814] Arabinose efflux permease |
TIGRFAM ID | [TIGR00711] drug resistance transporter, EmrB/QacA subfamily |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 0.215591 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 0.994671 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCGCGG CCGCCGCTGA CGGCCATATG GCGCCGGCGG TGGAGACGCC GGTCGGGCGC GCGGACGCCA GCGCCTGGCT GGCGGTGATC GCCGGCAGCC TCGGTGCGAT GATGGCGACG CTCGACGTCT CGATCGTCAA CTCGTCGCTG CCCACCATCC AGGGCGAGAT CGGCGCCAGC GGCACCGAAG GCACCTGGAT CGCGACCGCC TATCTGGTCG CGGAAATCGT CATCATCCCG CTGTCGGCCT GGCTCGAGCG CGTGCTCGGC CTGCGGACAC TGCTGATCGT CGCGGCGGCG CTGTTCACCG GCTTCTCGAT GATGTGCGGC TTCTCGACCA ACCTGACCAT GATGATCATC GGCCGGGTGG GGCAGGGCTT CACCGGCGGC GCGCTGATCC CGACCGCGAT GACGATCATC GCCACCCGCC TGCCGCGCGA GCAGCAGCCG GTCGGCAACG CCTTGTTCGG GGTGACCGCG ATCCTCGGGC CGGTGCTGGG GCCGCTGATC GGCGGCTGGC TGACCGAGAA CATCAGCTGG CACTATGCCT TCTTCCTCAA CCTGCCGATC GGCATCCTGC TGATCTCGCT GCTGCTGCTG ACCATGCCGC ACCACAAGGC GCGGCTGGGC GAGCTGCTCC AGGCCGACTG GCTCGGCATC GCCGGACTGA TGTTCGGACT CGGCGGCCTG ACCGTGGTGC TCGAGGAAGG CCAGCGCGAG CAATGGTTCC AGAGCGACGT GATCGTGAAG GTCTCGATCG TCGCCGCCCT CGGCTTCATC TCGCTGTTCG CGGGGCAGTT CCTCGCGCGC CGTCCGGTGA TCAAGCTCAA GCTGCTGCTC GACCGGCAGT TCGGCGCGGT CGCGGTGATG GCGATCGTGA TCGGCATGAT GCTCTACGGC ACCTCCTATG TGATCCCGCA ATTCCTGGCC GCGATCGCCG GCTACAACGC GCTGCAATCG GGCAAGATCG TGCTGATCTC GGGGATTCCC AGCCTGTTGC TGATGCCCTT CACGCCGCTG CTGATCCGCT ATGTCGACAT CCGCATCGCG GTCGGCATCG GCCTGGCGAT CATGGCGACG AGCTGCGGCA TCGACACCGC GCTCAGCGCC CAGTCGGACG GCGGCTCCTT CGTCGACAGC CAGCTCCTGC GCGGCGTCGG CACGATCATG GCCTTCCTGT TCCTCAACCA GGCGGCGATC GCCTCGGTGA GCGCCAGGGA CGTGGGCGAT GCCGCCGGCC TGTTCAGCGC GATGCGCAAC CTCGGCGGAT CGTTCGCGCT TGCCGGCATC GCCATCGTCC AGGACCAGCG CCAATGGCTC CACAACCGTC GGATCGAGGA ATCGCTCAAC GCCAATTCGG TCGGCCTGCA GGATTATCTG GCGGGCCTGA CCCATGCGCT CGGCAATGCC GATGCGGCGC TGCGCACCCT GGCGGGCACG ATCCAGCGCG ATGCGCTGGT GATGACCTTC AACGATATCT TCTGGCTGAT GACGGTCGGC ATCGTCTGCG TGATGCCGCT CGTCCTGTTC CTTCGCCCGC TGCCCAAGGG GCAGGCGATC GCGATGCATT GA
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Protein sequence | MSAAAADGHM APAVETPVGR ADASAWLAVI AGSLGAMMAT LDVSIVNSSL PTIQGEIGAS GTEGTWIATA YLVAEIVIIP LSAWLERVLG LRTLLIVAAA LFTGFSMMCG FSTNLTMMII GRVGQGFTGG ALIPTAMTII ATRLPREQQP VGNALFGVTA ILGPVLGPLI GGWLTENISW HYAFFLNLPI GILLISLLLL TMPHHKARLG ELLQADWLGI AGLMFGLGGL TVVLEEGQRE QWFQSDVIVK VSIVAALGFI SLFAGQFLAR RPVIKLKLLL DRQFGAVAVM AIVIGMMLYG TSYVIPQFLA AIAGYNALQS GKIVLISGIP SLLLMPFTPL LIRYVDIRIA VGIGLAIMAT SCGIDTALSA QSDGGSFVDS QLLRGVGTIM AFLFLNQAAI ASVSARDVGD AAGLFSAMRN LGGSFALAGI AIVQDQRQWL HNRRIEESLN ANSVGLQDYL AGLTHALGNA DAALRTLAGT IQRDALVMTF NDIFWLMTVG IVCVMPLVLF LRPLPKGQAI AMH
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