| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_4088 |
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| Symbol | |
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| ID | 5198925 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingomonas wittichii RW1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009511 |
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| Strand | - |
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| Start bp | 4489779 |
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| End bp | 4492223 |
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| Gene Length | 2445 bp |
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| Protein Length | 814 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 640583644 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_001264569 |
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| Protein GI | 148556987 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.0165324 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.80601 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGAAAC TGCTCCTGGC GAGCGCCGCA CTGGCCGGCC TCACCACTCC GCTCCATGCG
CAGGACGCGC CGCCTGCGGC CGACGACGCC GCGCAGTTCG AATCGCCGCG CGCGAACAGC
GAGATCATCG TCACCGCGCG CCGCCGGCAG GAGACCGCGC AGGAAGTGCC GCTGGCGATC
TCGGTGGTCG GCGCCAACCA GATCGAGAGC ACCGGCAACT TCAACATCCT GAAGCTGCAG
CAGCTCGCGC CGACGCTGCA GGTCTATTCG TCCAACCCGC GCAACACCTC GGTCAACATC
CGCGGCCTCG GCGTTCCGTT CGGCCTGACC AGCGACGGCT TCGAGCAGGG CGTCGGCATC
TATGTCGACG ACGTCTACAA CTCGCGCGTC GCCGCCGCCG TGTTCGATTT CCTCGACGTG
AACCAGGTCG AGGTGCTGCG CGGTCCGCAG GGCACGCTCT ACGGCAAGAA CACCACCGCC
GGCGCCATCA ACATCACCAC CAACCAGCCG ACCTTCGATT TCGAGGGCCG CGCCGAGGTG
ACGGCCGGCA ACCTGGAGTT CAAGCAGGCC AAGGCCGCCG TGTCGGGTCC GCTGTCCGAC
AAGGTCGCGG TGCGCGTCGC CGGTGGCGTG ACCTCGCGCC GCGGCACGCT CTACAACGTC
ACCACCGGGC AATATATCAA CGAGCAGGAC AATCTCGGCG TGCGCGGCAC CCTGTTGTTC
AAGCCCAGCG ACGACCTCAA GATCACCCTG TCGGGCGACT ACAGCAAGCA GGACCCCCTG
GGCTACGGCA CCACCTTCGT CCGCGTCGGC CGGACCCAGC GCGCCCTCTC CCGCCAATAT
GACGCGCTCG TCGCCGCCGC CAACGCCGCC GGCCGCAATT ATCAGGTGCC GAGCCGCAAT
CCCTATGACC GCCTGACCGA TCTCGACTCC AGCCTCAATG CCGGCAACAA GATCGGCGGC
GTGTCGCTCA AGGCGGTCTG GGATGCCGGC ATCGGCACCT TCACCTCGAT CACCGCCTGG
CGCTTCTGGG ATTGGAAGCC GGAGAACGAC CGCGACTTCA CCGGCCTGTC GGTCGTCGCC
AAGTCGCAGA ACCCGTCGCA GCAGGATCAG TACAGCCAGG AATTCCGCTA TAATTACGAG
GGCGAGAAGA TCGACTTCGT CGTCGGCCTG TTCGGCTTCA AGCAGCGCAT CGACACCCAG
GGCACCGAAT CCCAGGGCAT CGACGCCAGC CGCTGGAGCC TCACCGGCGC CCAGGCGAAC
GATCCGAGCA TCCTCGACGG CCTGACCGCC ACCAACACGC AATATCTCAA GAGCACCAGC
GCGGCGGCCT TCGGCCAGCT CGCCTGGAAG GTGACCGACG CCCTGACCAT CCAGCCGGGC
GTCCGCCTGA ACTACGACAA GAAGAGCGGC TTCTATGAGC GCGTCGTCAC CAACGGCGCG
GGCCAGGTGA TCAGCTGCAC CCCGGCTCCG GCGGCGGGCA CCGCCCTGGC GGCCCAGTGC
GGCGTGTATC AGCCGCAGTC GACCAGCCCG TCGGTGAGCA AGTGGAACTT CAGCTATGAT
CTGAACGTGA ACTACAAGTT CGCGCCCGGC ATCCTCGGCT ACGCCACCTA TGCGAAGAGC
TTCAAGACCG TCGGCATCAA CCAGAACGGC CTGCCGCTCA CCGCGGCCAA CGTGCCCGAT
CTCTCGGCGA GCACGGTGAA GCCGGAATCG GTCCATCACT TCGAAGTCGG CCTCAAGACC
CAGTTCTGGG ATCGCAGGGC CACCTTCAAC ATCAGCGCCT TCCGCACCGA CATCAAGAAT
TTCCAGGCGA CCGTGAACGG CGGTCAGTTC GGCACGGTGC GCGGCTATCT CGCCAACGCC
GGCAAGGTCC GGTCGCAGGG CGTCGAGACC GACTTCCGCA TCAATCCCAG CGAGCGCTTC
CTCGCTTATG TGAGCGGCGC CTACACCGAC GCGAAGTACA AGAAGTTCGA CAACGCGCCC
TGCCCGCCCG AGCTGTCGGG CGGCACGCTC CAGCCGGCGG GCGCCACGCC GGACTATTCG
CAGCCGGGCG TCCCCGGTGC GCTCAGCCCG CGCCAGTGCG ACATCTCCGG CCAGCGCCTC
CCCGGCGTCT CGCGCTGGTC CGCCTCCTTC GGCGCCGAGG CCAACATCCC GGTCGCGCTG
CTGGCGAACG AGGGCCAGGC ATATATCGGC ACCGACGGCA ATTACCGCTC GCACTGGAAC
TCGAACGCCT CGCCGTCGGT CTATACCGAG GTGAAGGGCT ATATCGTGAC CAACTTCCGC
GCCGGCTTCC GCACCGAGCG GTTCGACGTC TTCGGCTGGG TCCGCAACGC CTTCGACAAG
AAATATATCG ATCTGTTGCA GGTCGCCCCC GGCAATGTCG GCCTGATCGC CGGCACCCTC
GGCGACCAGC GCACCTGGGG TGCGACCGTC AAGGCGAAGT TCTGA
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| Protein sequence | MKKLLLASAA LAGLTTPLHA QDAPPAADDA AQFESPRANS EIIVTARRRQ ETAQEVPLAI
SVVGANQIES TGNFNILKLQ QLAPTLQVYS SNPRNTSVNI RGLGVPFGLT SDGFEQGVGI
YVDDVYNSRV AAAVFDFLDV NQVEVLRGPQ GTLYGKNTTA GAINITTNQP TFDFEGRAEV
TAGNLEFKQA KAAVSGPLSD KVAVRVAGGV TSRRGTLYNV TTGQYINEQD NLGVRGTLLF
KPSDDLKITL SGDYSKQDPL GYGTTFVRVG RTQRALSRQY DALVAAANAA GRNYQVPSRN
PYDRLTDLDS SLNAGNKIGG VSLKAVWDAG IGTFTSITAW RFWDWKPEND RDFTGLSVVA
KSQNPSQQDQ YSQEFRYNYE GEKIDFVVGL FGFKQRIDTQ GTESQGIDAS RWSLTGAQAN
DPSILDGLTA TNTQYLKSTS AAAFGQLAWK VTDALTIQPG VRLNYDKKSG FYERVVTNGA
GQVISCTPAP AAGTALAAQC GVYQPQSTSP SVSKWNFSYD LNVNYKFAPG ILGYATYAKS
FKTVGINQNG LPLTAANVPD LSASTVKPES VHHFEVGLKT QFWDRRATFN ISAFRTDIKN
FQATVNGGQF GTVRGYLANA GKVRSQGVET DFRINPSERF LAYVSGAYTD AKYKKFDNAP
CPPELSGGTL QPAGATPDYS QPGVPGALSP RQCDISGQRL PGVSRWSASF GAEANIPVAL
LANEGQAYIG TDGNYRSHWN SNASPSVYTE VKGYIVTNFR AGFRTERFDV FGWVRNAFDK
KYIDLLQVAP GNVGLIAGTL GDQRTWGATV KAKF
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