Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swit_4001 |
Symbol | |
ID | 5198571 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingomonas wittichii RW1 |
Kingdom | Bacteria |
Replicon accession | NC_009511 |
Strand | + |
Start bp | 4390740 |
End bp | 4394645 |
Gene Length | 3906 bp |
Protein Length | 1301 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 640583559 |
Product | glycosyl transferase family protein |
Protein accession | YP_001264484 |
Protein GI | 148556902 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3754] Lipopolysaccharide biosynthesis protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.248579 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGAAGGCGG CGCTGGTCCT CCACCTCTTC TACCCCGAGG TCGCGGTAGA GCTCATCGAC CGAGTGGCGG CGATCGGCGC GTCGGTCGAT ATCTTCGTCA CGCACAGCGT CGCGCTCGAC GAGACCGTCC TCGCCGCGCT CGATCGCCTG CCGCGCAAGG CGGAGGTGGT GACCGTCGCC AATCGCGGCT GGGACATCGG CCCGCTGTTC GAACTGCTGC CGCTGCTCGC CGAGCGCGGC TACGACCTGA TCGGCAAGCT CCACAGCAAG AAGGGTGGAT CGGGCTATGC GCCCGAATGG CGCCGGCTCG CCTATGACGG GATGATCGGA TCGCCCGCGC TGGTCGCCGA CATCGTCGCG GCGTTCGACG CGCACCCCGA TCTGTCGCTG CTGGGGGCGA AGCCGCTCTA CAAGTCGGTC GCCAGCCATC TGTTCCGCAA TGCCGAGCTG CTCTCCGACC TCGCCCCGCG CCTGACCGCG CCCGCCTATC CTCCGGCCGA CTGGGGTTTC TTCGCCGGCA CCTTCTTCTG GGCGCGGCGG ACGCTGCTGG AGAAGGTCGC GGCGCTTGCC GACTTCCGCG ACGCGGCCCC CAACCAGGAT CGCGACGGTG CGCTCGGCCA TGCGGTCGAG CGGCTGTTCG GCCTCGCCCC GATCGGGCTG GGCGGCAAGA TCGGACTGGT CGAGGACGGC CGGATCGAGC TGATCCGGGC GCCGGGCGCG CCGTCGCACG AGCCGGTGAT CCAGACGCTG GTCGACGCGG CGGGGCTCGG CGTCGGGCCG GTCGACGAGC AGCTGGCGGC GCTGATCGCG ACGCACAACC CGCTGATCGA CTATATCCGC CATGGCCGCG AGGCCGATGC GCTCGATCCC AATCTCTATT TCTCGTCCGC CTGGTATAAT TCGATCCACG CCGACGTGCA TGCGGCGGGG ATGCTGCCGC TTCACCATTA TATCCACCAT GGCGCGGCCG AGGGACGGTC GACCGGGCCG CTGTTCGACG GCCTCTTCTA CCGCAAGAGC CATGACGACG TGACCGGCGA TCCGCTGCGC CACTTCCTCG AGGTCGGGGC CGCCGAGGGG CGGGTGGCGA TCCCGGTCAG CCGGCCGCGC TACGAGACCG GCGACGAACG GCCGCGCCGC TTCTACCGCC ATTTCGACAT CGCCCGCGAG GAGGCCTTCC TGCGCGCGAT GGCGGAGCTG CCCGACGATG TCCGCCAGAG GGCCGACGAG ACGCTGGTCA GCGTTGTCAT GCCCGCCTGG AACCGGGCGG ACCGGATCGC GGCGGCGATC CGGTCGGTGC TGGCGCAGAG CCACCGCCGG TTCGAGCTGC TGGTCGTCGA CGACGGATCG ACCGACGGCA CCGCCGAGAT CGCCGCCGCC TTCGCCAGCG ACCCGCGCGT CCGCCTGATC CGCGGCGGGC ATGGCGGGGT CAGCGCCGCG CGCAACCTGG GGCTGGAGGC GGCGACCGGC GAGATCGTCG CCTATCTCGA CAGCGACAAT GTCTGGAAGA GCTGGTTCCT CGACGTGATG GCGCTGTTCA TGACCGCCGA GGGGCTCGAC GCCGCCTATT CGGGGATCGC GCTGCGCGAC GAGCTCAACC AGCTCACCGG CTATCGCGGC GACGATTTCG ACTGGGACGC CTGCCTCGCC GAGAATTATG TCGACCTCAA CGCCTTCTGC CACCGCCGCG CGCTGGTCGC CGGGCTTGGC GGGTTCGACA CCAACCTCCG CCGGATGGTC GATTGGGACC TGATCCTGCG CTACGCCAAG GGGCGCCCGG TCGGCTATGC GCCCTTCGTC GGCGGCGAAT ATCATGACGC GAAGGGCGAC CAGGGGCGGA TCACGGTCAC CCAGCCGGCC GCCTTCCAGG CGCTGGTGCG GACCAAGAAC CGGCTCGGCC TGCCCACCGG CGCCGGCGCG CATGAACTGG CGGCGGCGCT GAAGCTCACC ATCGCGATCA AGATCGCCGC GCCCGAGGAG GAGAAGGCCG CCTGGGGCGA CTATCACTTC GCCGAGAGCC TCGCCGCCGC GATCGGCCGG CTGGGCCATG CCGTCCGGAT CGACTTTCGT GGCCAGTGGC ACGGCCATGC GATCGCCAGC GAGGATCTGG TGATCGTGCT GCGCGGCCTG ATCCCCTATG AGCCGCGTCC CGGCCAGATG GCCTTCCTCT GGAACATCAG CCATCCCGAC CAGGTCGGCT TCGACGAATA TGACCGCTAT ACGCGCGTCT ATGCCGCCTC GGGATCGCAT GCCGCGCTGC TCGGGCATAT CGTCCGCCCG CCGGTCGCTC CGATGCTGCA GGCGACCGAT CCCGGGCGCT TCCACCCGAT CGATCCGCCG CCGTCTGCGC CTGACATCGT TTTCGTCGGC AATTCGCGCG GTGTCGACCG GGAGATCGTC TCCTGGGCGA TCGAGGCCGG GCATCCGCCC GCCATCTACG GCGACGGCTG GGACGGTCGC GTGCCGGCCG ATCTGGTCAG GGCCCGCAAC GTCGACAACC GCGCGGTCGG CGCGCTCTAT GCCGGCGCGG GCGTGGTGCT CAACGATCAC TGGCCGTCGA TGCGCGCCTT CGGCCTGCTG TCGAACCGGC TGTTCGACAT CGTCGGCAGC GGGGGGAGGG CGCTGTCCGA TCCGGTGCCG TCGATGGCGT CGGTGTTCGG CAATGCGGTG GCGCAGGTCT CGGGCCCGGC CGAGCTGAAG GCGGCGGCGG ACGAGCTGCT CGCCCGGCCG CGCAACGATC CGGCGGCGCG GCTGGCCGCC GACTATGTCC ATGCCGAGCA CAGCTTCGAC GCGCGGGCGC GGACCTTCAT CGCCGACGCC TTCGCGGTGC TGGGCCTGCC GTCGCCGGTT CCGGCCAATG CCCCCGATTT CGACGATCGG CTCGCCGTCC ACGTCATCGC CAGGCACAGC GCGATCGGCC CGCAGAGCTC GGCCTATATC CGGCTGGTCG CGCCGCTGAC CGACGAGAGC GTCGCGGGGC GGCTGCGGCT GACGCTCGGC GCGCCCGACG ATGCCGTGCC CGACTGCGAC GTCTGCATCG TCCAGCGCAC CGCGCTGCCG ACCGTCGAGG CGGTCGACGC GTTGGTCCGG CGGCTGGGGG AGATGGGCGC GGCGCTGGTC GTCGATGTCG ACGATGCCTT CACCCTGATC GGGTCGGATC ATCCCGAGCA TGATCTCTAT CGCCCGCTCA ACGCCGCGCT CGACCGGGCG GTGGCGGCCG CGGCCGAGAC CTGGTTCTCG ACCGCCGAGC TGGCTGACGC CTATGCGCCG CTCGGCGCGC GTGGAATCGT CGCGCCCAAC GCGATCGACC CCCGGCTGTG GCGCGACTGG CGCACGGCGC GGCCTACGCC CTTCGCCGGG GACAAGGTGC GGATGCTCTA CATGGGCACC CATACCCATG GGCCCGATCT CGCCCTGATC CGGCCGGCGC TCGACCGGCT CCATGCCGAG CGTGGCGACG CCTTCGACCT GACCGTGATC GGGGTCGATC CCGATCTCGC GCCCGCGCCC TGGCTGCGCC GGCTGGCGCC GCCGGCCGAG GCGGTCAGCT ATCCGCGCTT CGTCCGCTGG CTGCGCGGGC AGGGGCCGTT CGACCTCGGC CTGGCTCCGC TCGCCGATAA TCCGTTCAAC CGCTGCAAGT CGGACATTAA GGCTCTCGAC TATGCGGCGC TCGGCATCCT CCCGCTGGTC AGCGACGGAC CCGCCTATCG GGCCGACCGG CTGCTCGGGC GCCACATGCC GTTCGCGGAG GCGGATGGCT GGCTCGACGC GCTGCGGGCG GTGCTCGACG ATCGCGGCGA TGCGGCGCGG CGGGCGGCGG CGGTCGAGGC GCATGTCTGG GATCGCCGCG TGGTGGCGCG GAGCGGCCCG ATGCTCGTCG ACCGGCTCGA GGCATATCGA CGGTAG
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Protein sequence | MKAALVLHLF YPEVAVELID RVAAIGASVD IFVTHSVALD ETVLAALDRL PRKAEVVTVA NRGWDIGPLF ELLPLLAERG YDLIGKLHSK KGGSGYAPEW RRLAYDGMIG SPALVADIVA AFDAHPDLSL LGAKPLYKSV ASHLFRNAEL LSDLAPRLTA PAYPPADWGF FAGTFFWARR TLLEKVAALA DFRDAAPNQD RDGALGHAVE RLFGLAPIGL GGKIGLVEDG RIELIRAPGA PSHEPVIQTL VDAAGLGVGP VDEQLAALIA THNPLIDYIR HGREADALDP NLYFSSAWYN SIHADVHAAG MLPLHHYIHH GAAEGRSTGP LFDGLFYRKS HDDVTGDPLR HFLEVGAAEG RVAIPVSRPR YETGDERPRR FYRHFDIARE EAFLRAMAEL PDDVRQRADE TLVSVVMPAW NRADRIAAAI RSVLAQSHRR FELLVVDDGS TDGTAEIAAA FASDPRVRLI RGGHGGVSAA RNLGLEAATG EIVAYLDSDN VWKSWFLDVM ALFMTAEGLD AAYSGIALRD ELNQLTGYRG DDFDWDACLA ENYVDLNAFC HRRALVAGLG GFDTNLRRMV DWDLILRYAK GRPVGYAPFV GGEYHDAKGD QGRITVTQPA AFQALVRTKN RLGLPTGAGA HELAAALKLT IAIKIAAPEE EKAAWGDYHF AESLAAAIGR LGHAVRIDFR GQWHGHAIAS EDLVIVLRGL IPYEPRPGQM AFLWNISHPD QVGFDEYDRY TRVYAASGSH AALLGHIVRP PVAPMLQATD PGRFHPIDPP PSAPDIVFVG NSRGVDREIV SWAIEAGHPP AIYGDGWDGR VPADLVRARN VDNRAVGALY AGAGVVLNDH WPSMRAFGLL SNRLFDIVGS GGRALSDPVP SMASVFGNAV AQVSGPAELK AAADELLARP RNDPAARLAA DYVHAEHSFD ARARTFIADA FAVLGLPSPV PANAPDFDDR LAVHVIARHS AIGPQSSAYI RLVAPLTDES VAGRLRLTLG APDDAVPDCD VCIVQRTALP TVEAVDALVR RLGEMGAALV VDVDDAFTLI GSDHPEHDLY RPLNAALDRA VAAAAETWFS TAELADAYAP LGARGIVAPN AIDPRLWRDW RTARPTPFAG DKVRMLYMGT HTHGPDLALI RPALDRLHAE RGDAFDLTVI GVDPDLAPAP WLRRLAPPAE AVSYPRFVRW LRGQGPFDLG LAPLADNPFN RCKSDIKALD YAALGILPLV SDGPAYRADR LLGRHMPFAE ADGWLDALRA VLDDRGDAAR RAAAVEAHVW DRRVVARSGP MLVDRLEAYR R
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