Gene Swit_3978 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwit_3978 
Symbol 
ID5197933 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSphingomonas wittichii RW1 
KingdomBacteria 
Replicon accessionNC_009511 
Strand
Start bp4366393 
End bp4367508 
Gene Length1116 bp 
Protein Length371 aa 
Translation table11 
GC content69% 
IMG OID640583534 
ProductRNA procession exonuclease-like protein 
Protein accessionYP_001264461 
Protein GI148556879 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG1236] Predicted exonuclease of the beta-lactamase fold involved in RNA processing 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value0.107304 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value0.652273 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGGTAACA TCATAGCGTC TCCGATCGCC ATGTCACCAA AAACGGGCTA TATACGGGCG 
TTTACAGCAC TTTCGCAGTG GTCGACGGAA CCGGCGGCGG CGCCTATCGT CTCTTTCGTC
ATGGCCGCTC GCTGGATCGA AGCATCGCCC AAGGGCATCT ATGTGCGTCC CGCCGATGCG
TGGATCGATC CCTCGGTCCC GGTCGAACGC GCGCTGGTCA CCCACGGCCA TGCCGATCAT
GCGCGCGGCG GCCACGGCAC GAGCTGGGCG ACGCCCGAGA CGCTGGCGAT CATGGCGCTG
CGCTATGGCG ACATCGCGGG CATCCCCGTC GCCTATGGCG AGACCGTCTC GCTGGGCCCG
GTGAACATCA GCTATGTCCC TGCCGGCCAT GTGCTGGGAT CGGCGCAGAT CCTGCTCGAA
CATGCTGGCG AGCGGGTGGT GGTGACGGGC GACTACAAGC GCCGCGACGA TCCGACCTGC
GCGCCGTTCG AGCCGGTGCC GTGCGACGTC CTCGTCACCG AGGCGACCTT CGGCCTGCCG
GTGTTCCGCC ATCCGCCGAT CGGGCAGGAG ATCGACCGGC TGCTCGGCGC GCTCCATGCC
GCGCCGGAGC GCTGCGTGCT GGTCGGCGCC TATGCGCTGG GCAAGGCGCA GCGGGTGATC
GCCGAGCTGC GCGCGCACGG CCATGCCGAT CCGATCTACA TCCACGGCGC GCTCGAACGG
ATGTGCGACC TCTATCGCGA CTTCGGGGTC GAGCTGGGCG AGCTCGTCCC GGCGACGGCG
GCCTCGGCCG AGCAGCTGCG CGGCAAGGTG GTGCTGTGCC CGCCGTCGGC GCTCAACGAC
CGCTGGTCGC GGCGGCTGCC CGATCCGATC ACGGCGATGG CCTCGGGCTG GATGCGCGTG
CGTCAGCGCG CGCGGCAGAA GAATGTCGAG CTGCCGCTCG TCATCTCCGA CCATGCCGAC
TGGGACGAAC TGACCGCGAC GATCCACGAG GTCGCCCCGT CGGAGATCTG GGTGACGCAC
GGGCGGGAGG AAGCGCTGGT CCACTGGTGC GGCCTCCACC AGATGCAGGC CCGCGCCCTC
GCGCTGGTCG GCTATGAGGA TGAGGACGAG GGGTGA
 
Protein sequence
MGNIIASPIA MSPKTGYIRA FTALSQWSTE PAAAPIVSFV MAARWIEASP KGIYVRPADA 
WIDPSVPVER ALVTHGHADH ARGGHGTSWA TPETLAIMAL RYGDIAGIPV AYGETVSLGP
VNISYVPAGH VLGSAQILLE HAGERVVVTG DYKRRDDPTC APFEPVPCDV LVTEATFGLP
VFRHPPIGQE IDRLLGALHA APERCVLVGA YALGKAQRVI AELRAHGHAD PIYIHGALER
MCDLYRDFGV ELGELVPATA ASAEQLRGKV VLCPPSALND RWSRRLPDPI TAMASGWMRV
RQRARQKNVE LPLVISDHAD WDELTATIHE VAPSEIWVTH GREEALVHWC GLHQMQARAL
ALVGYEDEDE G