Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swit_3978 |
Symbol | |
ID | 5197933 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingomonas wittichii RW1 |
Kingdom | Bacteria |
Replicon accession | NC_009511 |
Strand | + |
Start bp | 4366393 |
End bp | 4367508 |
Gene Length | 1116 bp |
Protein Length | 371 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 640583534 |
Product | RNA procession exonuclease-like protein |
Protein accession | YP_001264461 |
Protein GI | 148556879 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG1236] Predicted exonuclease of the beta-lactamase fold involved in RNA processing |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 0.107304 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 0.652273 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGGTAACA TCATAGCGTC TCCGATCGCC ATGTCACCAA AAACGGGCTA TATACGGGCG TTTACAGCAC TTTCGCAGTG GTCGACGGAA CCGGCGGCGG CGCCTATCGT CTCTTTCGTC ATGGCCGCTC GCTGGATCGA AGCATCGCCC AAGGGCATCT ATGTGCGTCC CGCCGATGCG TGGATCGATC CCTCGGTCCC GGTCGAACGC GCGCTGGTCA CCCACGGCCA TGCCGATCAT GCGCGCGGCG GCCACGGCAC GAGCTGGGCG ACGCCCGAGA CGCTGGCGAT CATGGCGCTG CGCTATGGCG ACATCGCGGG CATCCCCGTC GCCTATGGCG AGACCGTCTC GCTGGGCCCG GTGAACATCA GCTATGTCCC TGCCGGCCAT GTGCTGGGAT CGGCGCAGAT CCTGCTCGAA CATGCTGGCG AGCGGGTGGT GGTGACGGGC GACTACAAGC GCCGCGACGA TCCGACCTGC GCGCCGTTCG AGCCGGTGCC GTGCGACGTC CTCGTCACCG AGGCGACCTT CGGCCTGCCG GTGTTCCGCC ATCCGCCGAT CGGGCAGGAG ATCGACCGGC TGCTCGGCGC GCTCCATGCC GCGCCGGAGC GCTGCGTGCT GGTCGGCGCC TATGCGCTGG GCAAGGCGCA GCGGGTGATC GCCGAGCTGC GCGCGCACGG CCATGCCGAT CCGATCTACA TCCACGGCGC GCTCGAACGG ATGTGCGACC TCTATCGCGA CTTCGGGGTC GAGCTGGGCG AGCTCGTCCC GGCGACGGCG GCCTCGGCCG AGCAGCTGCG CGGCAAGGTG GTGCTGTGCC CGCCGTCGGC GCTCAACGAC CGCTGGTCGC GGCGGCTGCC CGATCCGATC ACGGCGATGG CCTCGGGCTG GATGCGCGTG CGTCAGCGCG CGCGGCAGAA GAATGTCGAG CTGCCGCTCG TCATCTCCGA CCATGCCGAC TGGGACGAAC TGACCGCGAC GATCCACGAG GTCGCCCCGT CGGAGATCTG GGTGACGCAC GGGCGGGAGG AAGCGCTGGT CCACTGGTGC GGCCTCCACC AGATGCAGGC CCGCGCCCTC GCGCTGGTCG GCTATGAGGA TGAGGACGAG GGGTGA
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Protein sequence | MGNIIASPIA MSPKTGYIRA FTALSQWSTE PAAAPIVSFV MAARWIEASP KGIYVRPADA WIDPSVPVER ALVTHGHADH ARGGHGTSWA TPETLAIMAL RYGDIAGIPV AYGETVSLGP VNISYVPAGH VLGSAQILLE HAGERVVVTG DYKRRDDPTC APFEPVPCDV LVTEATFGLP VFRHPPIGQE IDRLLGALHA APERCVLVGA YALGKAQRVI AELRAHGHAD PIYIHGALER MCDLYRDFGV ELGELVPATA ASAEQLRGKV VLCPPSALND RWSRRLPDPI TAMASGWMRV RQRARQKNVE LPLVISDHAD WDELTATIHE VAPSEIWVTH GREEALVHWC GLHQMQARAL ALVGYEDEDE G
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