| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_3900 |
|---|
| Symbol | |
|---|
| ID | 5199998 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | + |
|---|
| Start bp | 4284046 |
|---|
| End bp | 4285248 |
|---|
| Gene Length | 1203 bp |
|---|
| Protein Length | 400 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 640583456 |
|---|
| Product | serine palmitoyltransferase |
|---|
| Protein accession | YP_001264383 |
|---|
| Protein GI | 148556801 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0156] 7-keto-8-aminopelargonate synthetase and related enzymes |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 0.673344 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGCCGACC TCCTCTCCAA GTTCGACCCG CTGATCGCCG AGCGCGAGGC GCTGCTCGCC
ACCGGCGTGC GCGATCCCTA CGCGATCGTC ATGGACAAGG TGCTGTCGCC GACCGAGGCG
ATGATCAACG GCAGGAAGAC GATCCTGCTC GGCACCTATA ATTACATGGG CATGACCTTC
GACCCGGACG TCATCGCCGC CGGCAAGCAG GCGCTCGACG AATTCGGCTC GGGCACCACC
GGCAGCCGGG TGCTCAACGG CACCTATCAG GGTCACAAGG CGTGCGAGGA CGCGCTCAAG
GAATTCTACG GGACCGAGCA CGCCATCGTC TTCTCGACCG GCTACCAGGC CAATCTCGGG
ATGATCTCCA CCCTGGCTGG CAAGGGCGAC TACATCATCC TCGACGCCGA CAGCCACGCC
TCGATCTATG ACGGCTGCTG GCTCGGCGAC GCGGAGATCG TCCGCTTCCG CCACAATTCG
GTCGAGGACC TCGACAAGCG GCTCGGCCGC CTGCCGGCCG AGGCGGGCAA GCTCGTCGTC
CTCGAAGGCG TCTATTCGAT GATGGGCGAC ATCGCCCCGC TCCAGGAGAT GGTCGCCGTC
TCGAAGAAGC ACGGCGCGAT GATCCTCGTC GACGAGGCGC ACGGCATGGG CTTCTTCGGC
GAGCATGGCC GCGGCGTGTT CGAGGAGGCC GGGGTGGAGG CCGACGTCGA CTTCGTCGTC
GGCACCTTCT CCAAGTCGGT CGGCACGGTC GGTGGCTTCT GCGTCTCCAA CCATCCGAAG
TTCGAGGTGC TGCGCCTCGT CTGCCGGCCC TATGTCTTCA CCGCCTCGCT GCCGCCGTCG
GTGGTCGCGA CCGCCGCGAC CTCGATCCGC AAGCTGATGC ATGCGGGCGA CAAGCGCGCG
CACCTCTGGA AGAATTCGCG CCGCCTGCAC CAGGGCCTGC GCGACATGGG CTACAAGCTC
GGCACCGAGA CCGCCCAGTC GGCGATCATC GCGGTGATCC TGACCGACAT GGCCCAGGCG
GTCGCGCTGT GGCAGGGCCT GCTCGAGGCG GGGCTCTATG TGAACACCGC CCGTCCGCCC
GCGACGCCGG CCGGCATGTT CCTGCTGCGC TGCTCGCTGT GCGCCGAACA TAGCGACGAA
CAGGTCGAGC AGATCCTGGG CATGTTCGAG AGCGCGGGGC GCGCCACGGG AGTAATCCCC
TGA
|
|---|
| Protein sequence | MADLLSKFDP LIAEREALLA TGVRDPYAIV MDKVLSPTEA MINGRKTILL GTYNYMGMTF
DPDVIAAGKQ ALDEFGSGTT GSRVLNGTYQ GHKACEDALK EFYGTEHAIV FSTGYQANLG
MISTLAGKGD YIILDADSHA SIYDGCWLGD AEIVRFRHNS VEDLDKRLGR LPAEAGKLVV
LEGVYSMMGD IAPLQEMVAV SKKHGAMILV DEAHGMGFFG EHGRGVFEEA GVEADVDFVV
GTFSKSVGTV GGFCVSNHPK FEVLRLVCRP YVFTASLPPS VVATAATSIR KLMHAGDKRA
HLWKNSRRLH QGLRDMGYKL GTETAQSAII AVILTDMAQA VALWQGLLEA GLYVNTARPP
ATPAGMFLLR CSLCAEHSDE QVEQILGMFE SAGRATGVIP
|
|---|
| |