Gene Swit_3889 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwit_3889 
Symbol 
ID5200289 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSphingomonas wittichii RW1 
KingdomBacteria 
Replicon accessionNC_009511 
Strand
Start bp4276632 
End bp4277060 
Gene Length429 bp 
Protein Length142 aa 
Translation table11 
GC content67% 
IMG OID640583444 
ProductPilT domain-containing protein 
Protein accessionYP_001264372 
Protein GI148556790 
COG category[R] General function prediction only 
COG ID[COG1487] Predicted nucleic acid-binding protein, contains PIN domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones35 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATCGTCC TCGACACCAA TGTCGTCTCC GAGGCGATGA AGCCTGAACC GAACCCGGAC 
GTGTGCGCCT GGCTCGATGA GCAGGCGGCG GAGACGCTCT ATCTTTCGAG CGTGACGATC
GCGGAACTGC TGTTCGGTAT CGGCGCGCTT CCCGACGGCC GGCGCAAGGA CAGGCTGGCC
GTGGCCTTGG ACGGGCTGCT CGAGCTGTTC GACGGGCGGA TCCTGCCCTT CGACATGGCC
GCCGCCCGTC ATTATGCCGA TCGCGCGGTC AGGGCGCGCA GTGCCGGCAA GGGATTTCCA
ACGCCGGACG GATATATCGC CGCCATCGCG GTCTCCCGCG GCTTCGTCGT GGCGACCCGG
GATGCCAGCG CATTCGACGC CGCCGGAATC GCCGTCATCG ATCCCTGGAA GGCCGATCGG
CGGCAATAG
 
Protein sequence
MIVLDTNVVS EAMKPEPNPD VCAWLDEQAA ETLYLSSVTI AELLFGIGAL PDGRRKDRLA 
VALDGLLELF DGRILPFDMA AARHYADRAV RARSAGKGFP TPDGYIAAIA VSRGFVVATR
DASAFDAAGI AVIDPWKADR RQ