| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_3826 |
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| Symbol | |
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| ID | 5198371 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingomonas wittichii RW1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009511 |
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| Strand | + |
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| Start bp | 4199699 |
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| End bp | 4202257 |
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| Gene Length | 2559 bp |
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| Protein Length | 852 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 640583381 |
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| Product | DNA topoisomerase I |
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| Protein accession | YP_001264309 |
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| Protein GI | 148556727 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0550] Topoisomerase IA |
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| TIGRFAM ID | [TIGR01051] DNA topoisomerase I, bacterial |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 0.801079 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.0383535 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGCTCG TCGTCGTCGA ATCCCCCGCC AAGGCCAAGA CCATCGAAAA ATATCTGGGG
CCGGGCCATC GCGTCCTCGC CTCCTATGGT CATGTCCGCG ACCTGCCCGC CAAGGACGGC
TCGGTCGATC CCGACAACGG CTTCGCGATG GAGTGGGAGG CCTATGCCGA CAAGAGCCGC
CAGCTCAAGG CGATCGCCGA CGAGGCGAAG GGCGCCGACA CGCTGATCCT CGCCACCGAC
CCCGACCGCG AGGGGGAGGC GATCAGCTGG CACGTCAAGG AAGTGCTGGG CAAGCGTCGC
GTGCTGCCCA AGGACGTTCG CCGCGTCACC TTCAACGCGA TCACCAAGGC CGCGGTCACC
GAGGCGATGG CGAATCCCCG CGACCTCGAC GAGGATCTGA TCGACGCCTA TCGCGCCCGC
CGCGCGCTCG ACTATCTGGT CGGCTTCACC CTGTCGCCGG TGCTGTGGCG CAAGCTGCCC
GGCGCCAAGT CGGCCGGCCG CGTCCAGTCG GTGGCGCTGC GCCTGGTCGT CGACCGCGAG
CGCGAGATCG AGCTGTTCAA GGCCCAGGAA TATTGGTCGG TCACCGCCGA TATGGAGTAT
GACGGCATCG GTTTCCTGAC CCGGCTGGTC CGCTGGAAGG GGCAGAAGAT CGACCGGCTG
ACGATCGGCA ACGGCAAGGA TGCCGAGGCC GCCAAGGCCG ATGTCGAGGC GGGCCGCTTC
ACCGTCGCCA GCGTCGAGAC CAAGCCGCTC ACCCGCAACC CGCCGCCGCC CTTCACCACC
TCGACCCTGC AGCAGGAGGC GGCGCGCAAG CTCGGCTTCT CGGCCAGCCA CACGATGCGG
ATCGCCCAGG CGCTCTACGA GGACGGCGCG ATCACCTATA TGCGGACCGA CGGCGTGCAG
ATGGATGGCA GCGCCATCTC CGCCGCGCGC GGCGCGATCG CCAACCGCTA CGACGCCTCC
TACGTGCCGG ACAAGCCGCG CCAGTACAGC GCCAAGGCCA AGAACGCGCA GGAAGCGCAT
GAGGCGATCC GCCCGACCGA CTTCTCGCGC GATCGCGCCG GCAGCGGCGA CCATGGCCGG
CTCTACGACT TGATCTTCAA GCGCGCGCTG GCCAGCCAGA TGGCGTCGGC GCGGCTTGAG
CGCACCACCG TCGACCTGGT CGACGGCACC GGCCAGAACG CCCTGCGCGC GACCGGCCAG
GTCGTCCTCT TCCCCGGCTA TCTCGCGCTC TACGAGGAAG GCCGCGACGA CCCGAATCCC
CAGGGCCAGC AGGCCGGGGG CGGGGACGCC GACGAGGACA GCCGCCGCCT GCCGCGGATG
AAGGAGGGCG ACAGCCCGGC GAAGAAGAAG GTCGACGCCG AGCAGCATTT CACCCAGCCG
CCGCCACGCT ATTCGGAGGC CAGCCTGGTC AAGAAGATGG AGGAGCTCGG CATCGGCCGG
CCGTCGACCT ATGCGTCGAT CCTTCAGACG CTCAAGGACC GCGACTATGT CACGGTCGAG
AAGAACCGCT TCACCCCGAA CGAGAGCGGG CGGCTGGTCA CCAGCTTCCT CGAACGCTTC
TTCGAGCGCT ATGTCAGCTA CGACTATACC GCGCATCTGG AGGAGGAGCT CGACGACGTC
TCGGGCGGCC GCGCCGGCTG GCAGCAGGTG CTCGAGGCCT TCTGGAAGGA CTTCAAGCCC
AAGACCGCCG AGGTGATGGA TCAAAAGCCG TCGGAGGTCA CCGCGGCGCT CGACGAGTTC
CTCGCGCCCT ATCTCTTCCC CGACAAGGGC GACGGCACCG ATCCGCGGCT CTGCCCGGTC
TGCCAGGAGG GGCGGCTGTC TCTGCGCGGC GGGCGTTTCG GCGCGTTCAT CGCCTGCTCC
AACTATCCGG AGTGCAAGTT CACCCGCCGC TTCGCGCAGG CGGGCGCCGC CAATGACGGC
GCCGATACGG GGCCGGTGGT GATCGGCACC GATCCGGCGA CCGGGCTCGA AGTGTCGAAG
CGGGCGGGGC GGTTCGGGCC CTATATCCAG CTCGGCGACG GCAAGGACGC CAAGCGCTCG
TCGATCCCGA AGGACGTGCT GGGCGACGAT CTCGACCTCG GCTGGGCGCT CAAGCTGCTG
TCGCTGCCGC GTCTGATCGG CCCGCACCCG GAGACGGGGC ACCCGATCAC CGCCTCGATC
GGCCGCTTCG GGCCCTATCT GGCGCATGAC GGCAAATATG CCCGGCTGGG ATCGACCGCC
GAGGTGTTCG AGACCGGCAT GAACGCCGCC GTCGTCAAGC TCGCCGAGGC CGCCAATGGC
GGCGGGCGCC AGCGCGGCAA GGCCGAGCCG CTCAAGACCT TCGGCGCCAG CCCGGTGACG
GGGAGCGAGG TCAAGCTGAT GGCGGGCCGC TTCGGCCCCT ATGTCACCGA CGGCGAGACC
AACGCGACCC TGCCCAAGAC CGCGAACCCC GACGAACTGA CCGCCGAAGC CGCGCTCGAA
CTGCTCGCCG CCCGCGCGGC GAAGGGCCCG CCGGCCAAGG GCAAGAAGAA GGCGCCGGCG
AAGAAGGCCG CGCCCAAGAA GGCGGCGGCG AAGAAGTAA
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| Protein sequence | MKLVVVESPA KAKTIEKYLG PGHRVLASYG HVRDLPAKDG SVDPDNGFAM EWEAYADKSR
QLKAIADEAK GADTLILATD PDREGEAISW HVKEVLGKRR VLPKDVRRVT FNAITKAAVT
EAMANPRDLD EDLIDAYRAR RALDYLVGFT LSPVLWRKLP GAKSAGRVQS VALRLVVDRE
REIELFKAQE YWSVTADMEY DGIGFLTRLV RWKGQKIDRL TIGNGKDAEA AKADVEAGRF
TVASVETKPL TRNPPPPFTT STLQQEAARK LGFSASHTMR IAQALYEDGA ITYMRTDGVQ
MDGSAISAAR GAIANRYDAS YVPDKPRQYS AKAKNAQEAH EAIRPTDFSR DRAGSGDHGR
LYDLIFKRAL ASQMASARLE RTTVDLVDGT GQNALRATGQ VVLFPGYLAL YEEGRDDPNP
QGQQAGGGDA DEDSRRLPRM KEGDSPAKKK VDAEQHFTQP PPRYSEASLV KKMEELGIGR
PSTYASILQT LKDRDYVTVE KNRFTPNESG RLVTSFLERF FERYVSYDYT AHLEEELDDV
SGGRAGWQQV LEAFWKDFKP KTAEVMDQKP SEVTAALDEF LAPYLFPDKG DGTDPRLCPV
CQEGRLSLRG GRFGAFIACS NYPECKFTRR FAQAGAANDG ADTGPVVIGT DPATGLEVSK
RAGRFGPYIQ LGDGKDAKRS SIPKDVLGDD LDLGWALKLL SLPRLIGPHP ETGHPITASI
GRFGPYLAHD GKYARLGSTA EVFETGMNAA VVKLAEAANG GGRQRGKAEP LKTFGASPVT
GSEVKLMAGR FGPYVTDGET NATLPKTANP DELTAEAALE LLAARAAKGP PAKGKKKAPA
KKAAPKKAAA KK
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