Gene Swit_3792 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwit_3792 
Symbol 
ID5199763 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSphingomonas wittichii RW1 
KingdomBacteria 
Replicon accessionNC_009511 
Strand
Start bp4160358 
End bp4162073 
Gene Length1716 bp 
Protein Length571 aa 
Translation table11 
GC content68% 
IMG OID640583347 
ProductAMP-dependent synthetase and ligase 
Protein accessionYP_001264275 
Protein GI148556693 
COG category[I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism 
COG ID[COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones29 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.104319 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACGAACA GCGGCACCGT GACGGACCCC ATCCCCCCCG GTCGCGGTGC CGCCTTCCCG 
GGCGGCGGGG ACGTGCCAGC GTCCCCGCCG ATTCCGCCCC GGCTGCTCAC CGACCTGATC
GACGCCGCGG TGCGCGACCA TGGCGAGCGG CGGGCGATCG ACTTCCTCGG GCGCCACTGG
ACCTATGCCG AGATCGGCGC GCTGGTCGAC CGCGCGGCGG CCGGCCTCCA GGCGATCGGC
GTCGGGCCGG GCATCCGCTT CGGCCTGTGC CTGCCCAACT CGCCCTATTT CGTCATCCTC
TATTTCGCGG CGCTGCGCTG CGGGGCGACG ATCGTCAATT TCAACCCGCT CTATGTCGAG
CATGAGCTGA AGCACCAGAT CCAGGATTCG GGCACGACCG TGATGGCCGT GATCGACGTC
GCCTCGATCC ACGCCAAGGT CGCCGCCGTC GCCGAGGAGA GCGGGCTGCG GACGATCATC
GTCTGCCCGA TGGCCGATAT CCTGCCGCCG CTGCTGTCGA TCGCCTATCG CCTGTTCAAG
CGCGGCGAGA TCGCGGCATG GCCGCGCGAC GGCCGGCACG TCACCTTCTC CACCGTGACC
GACGGCGCCG CCTCCGGCGG CTTCCGCCCG GTCGAGGTGT CGCCCGACGA CGTCGCGGTG
CTCCAATATA CCGGCGGCAC CACCGGCGTT CCCAAGGGGG CGATGCTAAG CCACGCCAAC
CTGACCGCGA ACAGCTACCA GATGATCCTC CACGTCGGGC AGCGGCCGGG CGCGCGGCAG
GACCGGATCA TGGGCGTGCT GCCGATGTTC CACGTCTTCG CGCTGACGAC GGTGCTCAAC
TATTCGGTCG ATACCGCGGC GGAGATGATC CTGCTGCCGC GCTTCGAGCT GAAGCAGTTC
CTGAAGACCG CGAAGCGCAC CCGGCCGACC AAGCTGCTCG CGGTGCCGAC CATGCTGACC
GCGATCAACA AGGCGGCCGC CAGCCAGGCG ATCCATTTCG ACGATCTCGA CTATTGCGTG
TCGGGCGGCG CCCCCCTGCC CTTCGACGTC CGCACCGAGT TCGAGCGGCT GACCGGCGCG
CGCGTCGTCG AGGGCTATGG CCTGTCGGAG ACCTCGCCGA TCCTGACCTG CAACCCGGTC
GAGGGCGCGG TGAAGGACAA CAGCGCCGGC CCGGCCTTCC CCGGCACCGT GCTGGAGATC
CGCAGCCTCG ACGATCCGCA CGTCATCCTG CCGACCGGCG AGCGCGGCGA GGTCTGCGCG
CGCGGGCCAC AGGTCATGAA GGGCTATTGG AACAAGCCCG AGGAGACCGA GAAGGTGTTC
GTCGACGGCG CGATCCGCAC CGGCGACGTC GGCTATCTCG ACGAGGACGG CTATCTGTTC
CTGGTCGACC GGATCAAGGA CGTCATCATC GCCGGCGGCT ACAACATCTA TCCGCGCGTG
ATCGAGGAGG CGCTCTACGA GCATCCCGCG ATCCTGGAGG CGGTGGTGAT CGGCGTGCCC
GACGCCTATC GCGGGCAGGC GCCCAAGGCG TTCGTCGTGC TGCGCCCCGG CCAGCAGGCC
AGCGTTGACG AATTGTTCGA ATTCCTCAAA AGCCGAGTCT CCAAGATCGA GATGCCGCGC
GAGGTCGAAA TCCGCACCAG CCTGCCCAAG ACGCTGATCG GCAAGCTCTC CAGGAAGGAG
CTTGTCGCCG AGGAAGCCAA GAAGGCGGCG AACTGA
 
Protein sequence
MTNSGTVTDP IPPGRGAAFP GGGDVPASPP IPPRLLTDLI DAAVRDHGER RAIDFLGRHW 
TYAEIGALVD RAAAGLQAIG VGPGIRFGLC LPNSPYFVIL YFAALRCGAT IVNFNPLYVE
HELKHQIQDS GTTVMAVIDV ASIHAKVAAV AEESGLRTII VCPMADILPP LLSIAYRLFK
RGEIAAWPRD GRHVTFSTVT DGAASGGFRP VEVSPDDVAV LQYTGGTTGV PKGAMLSHAN
LTANSYQMIL HVGQRPGARQ DRIMGVLPMF HVFALTTVLN YSVDTAAEMI LLPRFELKQF
LKTAKRTRPT KLLAVPTMLT AINKAAASQA IHFDDLDYCV SGGAPLPFDV RTEFERLTGA
RVVEGYGLSE TSPILTCNPV EGAVKDNSAG PAFPGTVLEI RSLDDPHVIL PTGERGEVCA
RGPQVMKGYW NKPEETEKVF VDGAIRTGDV GYLDEDGYLF LVDRIKDVII AGGYNIYPRV
IEEALYEHPA ILEAVVIGVP DAYRGQAPKA FVVLRPGQQA SVDELFEFLK SRVSKIEMPR
EVEIRTSLPK TLIGKLSRKE LVAEEAKKAA N