Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swit_3792 |
Symbol | |
ID | 5199763 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingomonas wittichii RW1 |
Kingdom | Bacteria |
Replicon accession | NC_009511 |
Strand | - |
Start bp | 4160358 |
End bp | 4162073 |
Gene Length | 1716 bp |
Protein Length | 571 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 640583347 |
Product | AMP-dependent synthetase and ligase |
Protein accession | YP_001264275 |
Protein GI | 148556693 |
COG category | [I] Lipid transport and metabolism [Q] Secondary metabolites biosynthesis, transport and catabolism |
COG ID | [COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 29 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 9 |
Fosmid unclonability p-value | 0.104319 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGACGAACA GCGGCACCGT GACGGACCCC ATCCCCCCCG GTCGCGGTGC CGCCTTCCCG GGCGGCGGGG ACGTGCCAGC GTCCCCGCCG ATTCCGCCCC GGCTGCTCAC CGACCTGATC GACGCCGCGG TGCGCGACCA TGGCGAGCGG CGGGCGATCG ACTTCCTCGG GCGCCACTGG ACCTATGCCG AGATCGGCGC GCTGGTCGAC CGCGCGGCGG CCGGCCTCCA GGCGATCGGC GTCGGGCCGG GCATCCGCTT CGGCCTGTGC CTGCCCAACT CGCCCTATTT CGTCATCCTC TATTTCGCGG CGCTGCGCTG CGGGGCGACG ATCGTCAATT TCAACCCGCT CTATGTCGAG CATGAGCTGA AGCACCAGAT CCAGGATTCG GGCACGACCG TGATGGCCGT GATCGACGTC GCCTCGATCC ACGCCAAGGT CGCCGCCGTC GCCGAGGAGA GCGGGCTGCG GACGATCATC GTCTGCCCGA TGGCCGATAT CCTGCCGCCG CTGCTGTCGA TCGCCTATCG CCTGTTCAAG CGCGGCGAGA TCGCGGCATG GCCGCGCGAC GGCCGGCACG TCACCTTCTC CACCGTGACC GACGGCGCCG CCTCCGGCGG CTTCCGCCCG GTCGAGGTGT CGCCCGACGA CGTCGCGGTG CTCCAATATA CCGGCGGCAC CACCGGCGTT CCCAAGGGGG CGATGCTAAG CCACGCCAAC CTGACCGCGA ACAGCTACCA GATGATCCTC CACGTCGGGC AGCGGCCGGG CGCGCGGCAG GACCGGATCA TGGGCGTGCT GCCGATGTTC CACGTCTTCG CGCTGACGAC GGTGCTCAAC TATTCGGTCG ATACCGCGGC GGAGATGATC CTGCTGCCGC GCTTCGAGCT GAAGCAGTTC CTGAAGACCG CGAAGCGCAC CCGGCCGACC AAGCTGCTCG CGGTGCCGAC CATGCTGACC GCGATCAACA AGGCGGCCGC CAGCCAGGCG ATCCATTTCG ACGATCTCGA CTATTGCGTG TCGGGCGGCG CCCCCCTGCC CTTCGACGTC CGCACCGAGT TCGAGCGGCT GACCGGCGCG CGCGTCGTCG AGGGCTATGG CCTGTCGGAG ACCTCGCCGA TCCTGACCTG CAACCCGGTC GAGGGCGCGG TGAAGGACAA CAGCGCCGGC CCGGCCTTCC CCGGCACCGT GCTGGAGATC CGCAGCCTCG ACGATCCGCA CGTCATCCTG CCGACCGGCG AGCGCGGCGA GGTCTGCGCG CGCGGGCCAC AGGTCATGAA GGGCTATTGG AACAAGCCCG AGGAGACCGA GAAGGTGTTC GTCGACGGCG CGATCCGCAC CGGCGACGTC GGCTATCTCG ACGAGGACGG CTATCTGTTC CTGGTCGACC GGATCAAGGA CGTCATCATC GCCGGCGGCT ACAACATCTA TCCGCGCGTG ATCGAGGAGG CGCTCTACGA GCATCCCGCG ATCCTGGAGG CGGTGGTGAT CGGCGTGCCC GACGCCTATC GCGGGCAGGC GCCCAAGGCG TTCGTCGTGC TGCGCCCCGG CCAGCAGGCC AGCGTTGACG AATTGTTCGA ATTCCTCAAA AGCCGAGTCT CCAAGATCGA GATGCCGCGC GAGGTCGAAA TCCGCACCAG CCTGCCCAAG ACGCTGATCG GCAAGCTCTC CAGGAAGGAG CTTGTCGCCG AGGAAGCCAA GAAGGCGGCG AACTGA
|
Protein sequence | MTNSGTVTDP IPPGRGAAFP GGGDVPASPP IPPRLLTDLI DAAVRDHGER RAIDFLGRHW TYAEIGALVD RAAAGLQAIG VGPGIRFGLC LPNSPYFVIL YFAALRCGAT IVNFNPLYVE HELKHQIQDS GTTVMAVIDV ASIHAKVAAV AEESGLRTII VCPMADILPP LLSIAYRLFK RGEIAAWPRD GRHVTFSTVT DGAASGGFRP VEVSPDDVAV LQYTGGTTGV PKGAMLSHAN LTANSYQMIL HVGQRPGARQ DRIMGVLPMF HVFALTTVLN YSVDTAAEMI LLPRFELKQF LKTAKRTRPT KLLAVPTMLT AINKAAASQA IHFDDLDYCV SGGAPLPFDV RTEFERLTGA RVVEGYGLSE TSPILTCNPV EGAVKDNSAG PAFPGTVLEI RSLDDPHVIL PTGERGEVCA RGPQVMKGYW NKPEETEKVF VDGAIRTGDV GYLDEDGYLF LVDRIKDVII AGGYNIYPRV IEEALYEHPA ILEAVVIGVP DAYRGQAPKA FVVLRPGQQA SVDELFEFLK SRVSKIEMPR EVEIRTSLPK TLIGKLSRKE LVAEEAKKAA N
|
| |