Gene Swit_3620 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwit_3620 
Symbol 
ID5198980 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSphingomonas wittichii RW1 
KingdomBacteria 
Replicon accessionNC_009511 
Strand
Start bp3978475 
End bp3979608 
Gene Length1134 bp 
Protein Length377 aa 
Translation table11 
GC content71% 
IMG OID640583175 
Productsuccinyl-diaminopimelate desuccinylase 
Protein accessionYP_001264104 
Protein GI148556522 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0624] Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases 
TIGRFAM ID[TIGR01246] succinyl-diaminopimelate desuccinylase, proteobacterial clade 


Plasmid Coverage information

Num covering plasmid clones35 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.459688 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATCGACC CCCTCGACCT GACCCAGCGC CTGATCGCCT GCCCCAGCGT GACCCCGGCC 
GACGCCGGGG CGATGGCCGT GATCGCGACG GCGCTGGAGT CGATCGGCTT CACCGTCCAT
CGCTTCGCGG CCGGCGAGGC GCCCGACGGG CCGGTCGAGA ATCTGTTCGC GATCCGGGGG
CAGGGCGGGC CGCATTTCGC CTTTGCCGGG CATAGCGACG TAGTGCCGCC CGGCGACGGC
TGGACCAGCG ATCCCTTCGT GCCGGAGATC CGCGGCGAGC TGCTCCATGG GCGCGGCGCC
GTCGACATGA AGGGAGCGAT CGCCGCCTTC ATCGCCGCCG CCGCGCGGCT GGGCGATCAT
CCCGGGACGA TCAGCCTGAT CATCACCGGC GACGAGGAGG GACCCGCCAC CTTCGGCACC
GTCGCGCTGA TCGACTGGAT GAAGGCGCGG GGCCTGTGCC CCGACCTCTG CCTGGTCGGC
GAGCCGACCT CGACCCACCG GCTCGGCGAC ATGGTGAAGA TCGGCCGGCG CGGATCGGTC
AACATGTGGA TCGAGAATGT CGGGACGCAG GGCCATGTCG CCTATCCGCA CCTCGCCGCC
AACCCGATCC CCGCGCTGGT CAAGGCGCTT GACGCGCTCG CGGCGCTCCA TCTCGACGAC
GGCAACGCCT GGTTCCAGCC GTCGAACCTC GAGATCACGA CGGTCGACGT CGGCAATGCC
GCGACCAACG TCATCCCCGC CGTCGCGCGG GCGCGGCTCA ACATCCGCTT CAACGACGAG
CATCGCGGCG CCGACCTGGT CGAGCTGGTC CGCCGCACCG TCGCGGAGCA TGCGCCGGCG
GCGACGGTGC GCGCGGTGAT CTCGGGCGAG AGCTTCATCA CCCCGCCCGG CGACTTCTCG
GCGCTGATCT CGGCGGCGAT CATGAAGGTG ACCGGGCTGA CCCCCGAGCT GTCGACCACC
GGCGGCACCT CCGACGCGCG CTTCCTGTCG AAGCTCTGCC CGGTCGTCGA GTTCGGCCTG
TGCAACGCGA CGATGCACAA GCTGGACGAG GCGGTGGCGA TCCCCGATCT CCACGCCCTC
GCCGACATCT ACGAGGACAT CGTCCGCACC GTGCTGGCGC ACCCCGGAGC CTAA
 
Protein sequence
MIDPLDLTQR LIACPSVTPA DAGAMAVIAT ALESIGFTVH RFAAGEAPDG PVENLFAIRG 
QGGPHFAFAG HSDVVPPGDG WTSDPFVPEI RGELLHGRGA VDMKGAIAAF IAAAARLGDH
PGTISLIITG DEEGPATFGT VALIDWMKAR GLCPDLCLVG EPTSTHRLGD MVKIGRRGSV
NMWIENVGTQ GHVAYPHLAA NPIPALVKAL DALAALHLDD GNAWFQPSNL EITTVDVGNA
ATNVIPAVAR ARLNIRFNDE HRGADLVELV RRTVAEHAPA ATVRAVISGE SFITPPGDFS
ALISAAIMKV TGLTPELSTT GGTSDARFLS KLCPVVEFGL CNATMHKLDE AVAIPDLHAL
ADIYEDIVRT VLAHPGA