Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swit_3620 |
Symbol | |
ID | 5198980 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingomonas wittichii RW1 |
Kingdom | Bacteria |
Replicon accession | NC_009511 |
Strand | + |
Start bp | 3978475 |
End bp | 3979608 |
Gene Length | 1134 bp |
Protein Length | 377 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 640583175 |
Product | succinyl-diaminopimelate desuccinylase |
Protein accession | YP_001264104 |
Protein GI | 148556522 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0624] Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases |
TIGRFAM ID | [TIGR01246] succinyl-diaminopimelate desuccinylase, proteobacterial clade |
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Plasmid Coverage information |
Num covering plasmid clones | 35 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.459688 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATCGACC CCCTCGACCT GACCCAGCGC CTGATCGCCT GCCCCAGCGT GACCCCGGCC GACGCCGGGG CGATGGCCGT GATCGCGACG GCGCTGGAGT CGATCGGCTT CACCGTCCAT CGCTTCGCGG CCGGCGAGGC GCCCGACGGG CCGGTCGAGA ATCTGTTCGC GATCCGGGGG CAGGGCGGGC CGCATTTCGC CTTTGCCGGG CATAGCGACG TAGTGCCGCC CGGCGACGGC TGGACCAGCG ATCCCTTCGT GCCGGAGATC CGCGGCGAGC TGCTCCATGG GCGCGGCGCC GTCGACATGA AGGGAGCGAT CGCCGCCTTC ATCGCCGCCG CCGCGCGGCT GGGCGATCAT CCCGGGACGA TCAGCCTGAT CATCACCGGC GACGAGGAGG GACCCGCCAC CTTCGGCACC GTCGCGCTGA TCGACTGGAT GAAGGCGCGG GGCCTGTGCC CCGACCTCTG CCTGGTCGGC GAGCCGACCT CGACCCACCG GCTCGGCGAC ATGGTGAAGA TCGGCCGGCG CGGATCGGTC AACATGTGGA TCGAGAATGT CGGGACGCAG GGCCATGTCG CCTATCCGCA CCTCGCCGCC AACCCGATCC CCGCGCTGGT CAAGGCGCTT GACGCGCTCG CGGCGCTCCA TCTCGACGAC GGCAACGCCT GGTTCCAGCC GTCGAACCTC GAGATCACGA CGGTCGACGT CGGCAATGCC GCGACCAACG TCATCCCCGC CGTCGCGCGG GCGCGGCTCA ACATCCGCTT CAACGACGAG CATCGCGGCG CCGACCTGGT CGAGCTGGTC CGCCGCACCG TCGCGGAGCA TGCGCCGGCG GCGACGGTGC GCGCGGTGAT CTCGGGCGAG AGCTTCATCA CCCCGCCCGG CGACTTCTCG GCGCTGATCT CGGCGGCGAT CATGAAGGTG ACCGGGCTGA CCCCCGAGCT GTCGACCACC GGCGGCACCT CCGACGCGCG CTTCCTGTCG AAGCTCTGCC CGGTCGTCGA GTTCGGCCTG TGCAACGCGA CGATGCACAA GCTGGACGAG GCGGTGGCGA TCCCCGATCT CCACGCCCTC GCCGACATCT ACGAGGACAT CGTCCGCACC GTGCTGGCGC ACCCCGGAGC CTAA
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Protein sequence | MIDPLDLTQR LIACPSVTPA DAGAMAVIAT ALESIGFTVH RFAAGEAPDG PVENLFAIRG QGGPHFAFAG HSDVVPPGDG WTSDPFVPEI RGELLHGRGA VDMKGAIAAF IAAAARLGDH PGTISLIITG DEEGPATFGT VALIDWMKAR GLCPDLCLVG EPTSTHRLGD MVKIGRRGSV NMWIENVGTQ GHVAYPHLAA NPIPALVKAL DALAALHLDD GNAWFQPSNL EITTVDVGNA ATNVIPAVAR ARLNIRFNDE HRGADLVELV RRTVAEHAPA ATVRAVISGE SFITPPGDFS ALISAAIMKV TGLTPELSTT GGTSDARFLS KLCPVVEFGL CNATMHKLDE AVAIPDLHAL ADIYEDIVRT VLAHPGA
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