Gene Swit_3580 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwit_3580 
Symbol 
ID5199577 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSphingomonas wittichii RW1 
KingdomBacteria 
Replicon accessionNC_009511 
Strand
Start bp3942286 
End bp3944793 
Gene Length2508 bp 
Protein Length835 aa 
Translation table11 
GC content69% 
IMG OID640583135 
ProductTonB-dependent receptor 
Protein accessionYP_001264064 
Protein GI148556482 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG1629] Outer membrane receptor proteins, mostly Fe transport 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCCTTC AAGAAAGATC CGCCGTGAAC ATCCAAGGAC ATCTACCCGT CTCCTCCCGC 
CACGATCCGC GCCTTCCCGC GTCGCGGCGG CGGGCGCCGA ACAAGGCCCG CCTCTATCTG
GGCCTGGCGT CGATCGGACT GCTGGGCTGG CAGAACCCGG CGCAGGCCGA GGACCAGCCG
GACGAGCAGG ACTCGATCGT GGTCGTCGGC TCGCGCAGCG GCAATGCCCG CGCGCTCGAA
AGCTCCGCGC CGATCCAGGT CGTCGGCGGC GACACCCTGC GCGACACCGG ATCGCGGACC
CTGTCGGAAG CGCTGCAGCG GACCGTGCCC TCGTTCAACT TCCCGACCTC GGTGCCGTCG
TCGAACGCCG CCAGCTTCGT CAAGGGCGTG TCGCTGCGCG GCCTCGCCGC CGACCAGACG
CTGGTGCTGA TCAACGGCAA GCGCCGCCAT GCGACGGCGC AGCTCAACGC CGGCGGCGGC
ACGACCAAGG GCGCCCAGAC GGTCGACCTC AACAGCATCC CGCTGAGCGC GGTGGAGCGG
GTCGAGGTGC TGCTCGACGG CGCGTCGGCG CAATATGGAT CGGACGCGGT CGCCGGCGTC
GTCAACATCG TCCTGAAGCA GGGCAGCGAG GGCGGCGACA TCGCGCTGCT CTACGGCATC
AACGACAAGG GCGACGGCAA GACCAAGAGC GTCGAGGGAT CGTTCGGCCT GAAGCTTCCG
GGCGACGGCT TCGTCCGCTT CGCCTTCGAC GCGTGGGACA TCGGGCGCAC CCGCCTGTCG
GTGCCCGACA CCCGCCAGAT GTATTTCGCC GGCGACCCGC GCGAGGCGAG CTATCCGAAC
CGCGACTGGT TCTACGGCAG CGGCGCGACC AAGCGGCAGA ACATCTTCAT CAACGGCGAG
ACCACCGTCG GCGGGGTGAC CTTCTACGCG CAGGGCAGCT ATGGCTGGCG CAAGGACGAG
GGCTTCGGCA ATCTTCGCCA GCCCAATTCC GACCAGACGG TGCGCGCTCT GTTCCCGGAC
GGGTTCCAGC CCTTCCTCCA CATCCGGTCG CGCGACGCCG CCGCCGCCGT GGGGGGGCGC
TGGGGCTCGG CCGCCGCGGG CGATTTCGAC CTGAGCGCCA ATTACGGCCG CAACCGGGTC
AAGAGCGTGG TGTCGAACAC CAACAACGCC AGCCTCGGCA CCGCCAGCCC GACCGCGTTC
GACACCGGCG ACCTGCTGAA CGAGCAGACC AACGTCAACT TCGACTGGAA GCGCCCGTTC
GCCGTGGCGT TCCTGCCGAC CCCGCTCAAC GTCGCCGCCG GCCTGACCTA TCGGCACGAG
GCCTATGAGG TGTTCGAGGG CGACTATGGC TCCTGGGCCA ATGGCGGCGT GCCGATCCTC
GACGGCCCCA ATGCGGGCAA GGTGGCGACG CCGGCTTCGC AGGGCTTCGG CGGCTTCTCG
CCCGACGATG CCGGGCGCCT CTCCCGCAAT GTCTATGGCG GCTATCTGGA GCTGGAGAAT
TCGCCGACTG AGAAGCTGCG GATCACCCTG TCGGGCCGGT TCGAGCATTA TTCGGACTTC
GGATCGACCA CCAACGTCCG GCTGGCGACC CGCTACGAGC TCACGCCGAC GCTGGCGTGG
CGGTTCAGCG CGGGCACCGG CTATCGCGCG CCGTCGCTGG GCCAGTCGGC CTATTCGCGC
ACCATCCCGA ACATCACCAA CGGCGTGCTC GCCACCAACC GCCTCGCCCG GGTCGACAGC
GTGGAGGCCC GCGCGCTGGG CGCGACGGCG CTCAAGCCCG AAAAGTCGGT CAACCTGTCG
ACCGGCTGGG TATGGACGCC CAGCCCGGCC TTCTCGGCGA CACTGGACGT CTACCAGATC
AGCATCGACG ACCGGATCGT CCTGTCGGAG ACGCTGACCG GGGCGCTGGT CCGCCAGGTG
TTGGCCAATG CCGGCTTCCC GACCTATTCG GGCCTGCAAT ATTTCACCAA CGCGGTCGAC
ACCCGGACCC GCGGCATCGA CGCCACGGCC CGCTACCGGT TCAATCTGGC GTCGGGCGCC
AGGCTCGACC TGAGCGCCGG CTTCAACTGG AACGAGACCA AGATCACCCA CGTCAAGGAC
ACGCCCGCCG TGCTGAGCGG CAGCGGGCTC GTCCTGATCG GGCGCGAGGC CTCGTCGCTG
ATCGAGGAGG CGAACCCCGA TACCTTCCTG CGGCTGGCGG CCGACTATGG CGCGGGGCCG
TTCGAGGCCC ATCTCTCCGG CGTGCGCTAC GGCGTCTACC GGACCCGCCA CACCAGCAAC
CCGGCCTTCG ACCAGCGCTA CGGCCCGCAG GTCGTGGTCA ATATCGCCGC CGGCTACGCG
CTGTTCGAGG GGGTCAAGCT GTCGGCCGGC GTCAACAACC TGTTCGGCAG CCATCCCGAC
AAGGTCCTGA CCGCGATCCG CAACCCGGTC GTCTCGGTCT ATTCGGGCCT GTCGCCCGAG
GGCGGCGCCG GCCGCACCTA TTTCGCCCGC CTCGGTTATT CCTTCTGA
 
Protein sequence
MSLQERSAVN IQGHLPVSSR HDPRLPASRR RAPNKARLYL GLASIGLLGW QNPAQAEDQP 
DEQDSIVVVG SRSGNARALE SSAPIQVVGG DTLRDTGSRT LSEALQRTVP SFNFPTSVPS
SNAASFVKGV SLRGLAADQT LVLINGKRRH ATAQLNAGGG TTKGAQTVDL NSIPLSAVER
VEVLLDGASA QYGSDAVAGV VNIVLKQGSE GGDIALLYGI NDKGDGKTKS VEGSFGLKLP
GDGFVRFAFD AWDIGRTRLS VPDTRQMYFA GDPREASYPN RDWFYGSGAT KRQNIFINGE
TTVGGVTFYA QGSYGWRKDE GFGNLRQPNS DQTVRALFPD GFQPFLHIRS RDAAAAVGGR
WGSAAAGDFD LSANYGRNRV KSVVSNTNNA SLGTASPTAF DTGDLLNEQT NVNFDWKRPF
AVAFLPTPLN VAAGLTYRHE AYEVFEGDYG SWANGGVPIL DGPNAGKVAT PASQGFGGFS
PDDAGRLSRN VYGGYLELEN SPTEKLRITL SGRFEHYSDF GSTTNVRLAT RYELTPTLAW
RFSAGTGYRA PSLGQSAYSR TIPNITNGVL ATNRLARVDS VEARALGATA LKPEKSVNLS
TGWVWTPSPA FSATLDVYQI SIDDRIVLSE TLTGALVRQV LANAGFPTYS GLQYFTNAVD
TRTRGIDATA RYRFNLASGA RLDLSAGFNW NETKITHVKD TPAVLSGSGL VLIGREASSL
IEEANPDTFL RLAADYGAGP FEAHLSGVRY GVYRTRHTSN PAFDQRYGPQ VVVNIAAGYA
LFEGVKLSAG VNNLFGSHPD KVLTAIRNPV VSVYSGLSPE GGAGRTYFAR LGYSF