Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swit_3561 |
Symbol | |
ID | 5199533 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingomonas wittichii RW1 |
Kingdom | Bacteria |
Replicon accession | NC_009511 |
Strand | - |
Start bp | 3921316 |
End bp | 3923457 |
Gene Length | 2142 bp |
Protein Length | 713 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 640583116 |
Product | TonB-dependent siderophore receptor |
Protein accession | YP_001264045 |
Protein GI | 148556463 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG4774] Outer membrane receptor for monomeric catechols |
TIGRFAM ID | [TIGR01783] TonB-dependent siderophore receptor |
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Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCGTTCA ACAACAAGAT ACTCGCCGCG CTGATGGGCT CCGCCCTCGC CATGCCGGCC TTCGCGGCCG ATGCCGATGC GGACGCCGCG CCGAACCGCG ACGACATCAT CGTCCTGGGC CAGCAGATGA AGGCCGCGCC CAACGCCGGC AAATCCGACG TGCCGCTGAT CGAGACGCCC CAGGCGATCT CGATCATCTC GACCGAGCAG CTCAAGGCGC GCGGCGTCGT CCGCCTCGCC GAGGCGCTGC GCGGCGTCGC CGGCGTCTCG CGCAGCAGCA CCTATGGCTA TTATGACGCC TATCAGATCC GCGGCTTCGA CGCGGCCTAT GGCAGCGTCT ACCTCGACGG GCTGATCAGC CAGAACGTCG CCGGATCGAA CAACGAGCTC GCCGGCCTCG AACAGATCGA GGTGGTGAAG GGCCCGGCGT CGATGCTGTT CGGATCGGCG CCGCTCGGCG GCATCATCAA CCTGGTCAGC AAGCGGCCGC GCGACGACGA CTTCGTCGAT GTCGGCCTCG CCACCGGCTC CTACAATCTG GTCGAGGGGA CGGTCGACGC CAACATGCGG CTCGACGCGG CGGGCACCCT GCTCGCGCGG CTCAACCTAG TCTATCGCGA CAGCAACGAC TTCGTCCGCT TCGCCGACAA GAACCGCATC CACATCGCCC CGGCGCTGAC CTGGCGGATG GGCGAGGACA GCGAGCTGAC CCTGCTCACC CGCTACGAGC GCAACCATGA CTCGCCCTGG TCGCCGGTCT CCGCCTGGGG GACGGTGCTG CCGAGCGCGC ATGGCAAGCT GCCGATCGAC TTCACCATCA ACGGCAAGGA TTCGAAGGCG ATCCACAACC AGCGCTATTA TCATCTCGGC TACGCCTTCA AGCACCGCTT CTCGGACGCG CTCTCCTTCG ACCAGACGCT GCGCTACACG GACCGCAAGG TCTATTGGAA CAACTGGATC TTCTGGGCCG GCTTCGTCGA CGGCGCGGTG GTCGACGGCG TCCAGCAGGG GCATGTCGCC GGCCGCTACG TCTACGGCCC GTTCCGCCAG CGCGACAAGG ACCTCTCCAC CGACGGCCAT TTCACGCTGA GGGTCGAGAC CGGCCCGGTC AGCCACGAGA TATTGGTCGG CCTCGACTAT CGCCGGAACC GCAGCCGCTT CGCCGATGAC GGCGGCAATT TCGATCCGAG CGCCAACCCG CTCGACATCC TCGCCCCCGA CTATGATCGA CCCTTCGTCC ACGATCCGGC GGCCGCCTAT GGCGGCGGCG GCAAGTCCGA CCAGACCGGC CTCTACATCC AGGACCATGT CCGCTTCGGC GAGCGCGCGA CGCTGACCCT GGGCGGCCGC TATGACTGGG CGCACAGCGA CGGCGGCGTG AAGGACCACA AGTTCAGCCC GCGCGTCGGC GCGACCTACG TCGTCCTGCC CGGCGCGTCG CTCTATGCGA GCTGGTCGAA ATCCTTCGTG CCGCAGGCCG GCTCCTTCAC CGTCGCCGGC GACGCCCTGC CGCCCGAGAC CGGCCGCAAC ATCGAGACCG GCATCAAGGT CCAGAGCCCC GACAGCCGGC TGACCGGCAT GGTCTCGATC TTCGAGCTGA CCCGGCAGAA CGTCGCGACC GAAGACCCGG CCAACCCCTT CTTCTTCATC AGCACGGGCG AGCAGCGCAG CCGCGGCGTC GAGGTCGAGG CGACCTGGCG GCCGACCCCG GCCTGGACGC TGTCGATCGC CTATGCCTAT CTCGACGCCA AGATCACCAG GGACAACCTC CTCCCGGTCG GCGCGCGGTT GCAGAACGTG CCCAGGCACA ACCTCAACCT GTTCGGCGAA TATGTCGTGC CGCAGGGGCC GCTCGCCGGC CTCGGGCTGA ACCTCGCCTT CCAGTACAAC AGCGACAAGA TCGGGGCGAA CTATCCCGAG GATGTCAACG GCGACGGCGT GCCCGATCCG ATCGCGGCCT TCACGCTGCC CAGCTATGCG CTGGTCGACG CCGGCATCTC CTACCGCTTC GGGCCGTGGG GCGTCCGCCT CAACGTCAAC AACCTGTTCG ACAAGCGCTA CTTCCCCGAC GCCTGCTGCG TCGACCGCGT CACGCCGGGC GAACCGCGCA ACTGGCGCCT CTCGCTCACC CGCAGCTTCT GA
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Protein sequence | MSFNNKILAA LMGSALAMPA FAADADADAA PNRDDIIVLG QQMKAAPNAG KSDVPLIETP QAISIISTEQ LKARGVVRLA EALRGVAGVS RSSTYGYYDA YQIRGFDAAY GSVYLDGLIS QNVAGSNNEL AGLEQIEVVK GPASMLFGSA PLGGIINLVS KRPRDDDFVD VGLATGSYNL VEGTVDANMR LDAAGTLLAR LNLVYRDSND FVRFADKNRI HIAPALTWRM GEDSELTLLT RYERNHDSPW SPVSAWGTVL PSAHGKLPID FTINGKDSKA IHNQRYYHLG YAFKHRFSDA LSFDQTLRYT DRKVYWNNWI FWAGFVDGAV VDGVQQGHVA GRYVYGPFRQ RDKDLSTDGH FTLRVETGPV SHEILVGLDY RRNRSRFADD GGNFDPSANP LDILAPDYDR PFVHDPAAAY GGGGKSDQTG LYIQDHVRFG ERATLTLGGR YDWAHSDGGV KDHKFSPRVG ATYVVLPGAS LYASWSKSFV PQAGSFTVAG DALPPETGRN IETGIKVQSP DSRLTGMVSI FELTRQNVAT EDPANPFFFI STGEQRSRGV EVEATWRPTP AWTLSIAYAY LDAKITRDNL LPVGARLQNV PRHNLNLFGE YVVPQGPLAG LGLNLAFQYN SDKIGANYPE DVNGDGVPDP IAAFTLPSYA LVDAGISYRF GPWGVRLNVN NLFDKRYFPD ACCVDRVTPG EPRNWRLSLT RSF
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