Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swit_3541 |
Symbol | |
ID | 5196178 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingomonas wittichii RW1 |
Kingdom | Bacteria |
Replicon accession | NC_009511 |
Strand | + |
Start bp | 3899969 |
End bp | 3901552 |
Gene Length | 1584 bp |
Protein Length | 527 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 640583096 |
Product | peptidase M23B |
Protein accession | YP_001264025 |
Protein GI | 148556443 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0739] Membrane proteins related to metalloendopeptidases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 0.59745 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 0.860043 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGTTCCGCA GCGACGGCCA GGATCTTTCG GCACAGGGCT ACGCGGGCGG CGCTAGCCGG GGCGCGCTCG TCGTCGCCCG GACGAACCGC TTCCCCGCGA TCGGCCGGCT GATCGACAGC CCGATCGGCG ATGCGGTCGA CCGGCTCGCC GGCGCCGACC TCGTCGTCGA CCTCGGCGCG CGGATCGGAT CGCGCGAATG GTTCCGCGGC CTGCTCACCT GCCTGGGGCT CTGCACCGCC GCGGGGATGA TGGCGCCCGA TTTCAAGCCG ATCGGCTTCG TCGCCGAACC GCCGATGAGC GCCGCGCACC AGCAACAGGT CCGCACGCTC GGCATCGCGC CGCTCGGCCT GGGTGGCGAT ACCGGCCAGC GCATCGCGGC GACCAGCGCG GTCGAGCCGC TCACCGACAC GCCCGAGCGG CCGCGCGTCG AGCTGGCGGC GACGATCGGG CAGGGCGACG GCTTCGCCCG CGTCCTCGAA CGCGCGGGCG TCTCGCGCGA CGAGGCGGGC AAGGTCGCGT CGATGGTCTC CGACGCCGTG CCGCTCGACG ATCTTCGCGC GGGCACCCGG ATGGACCTGG TGCTCGGCCG CCGCGAGGTG AAGAGCGACC CACGCCCGCT CGAGACGCTC GACTTCCGCG CCCGCTTCGA CCTCAAGCTC GCGGTCGAGC GGGTCGACGG CGCGCTCCGC CTCAAGCGCA TCCCGATCGC GGTCGACCAT ACGCCGCTGC GCATCCAGGG CCGGGTCGGC TCCAGCCTCT ACCGTTCGGC GCGCGCCGCC GGCGTCCCCG CCGACGCGAT CGAGGCCTTC ATCAAGGCGA TCTCGCAGAA GCTGTCGATG CGCAGCATCG GCTCCGACGC GCGCTTCGAC GCGATCATCG AGCATGCCCG CGCCGAGACC GGCGAGGTCA AGGTCGGCGA CCTGCTGTTC GCGGGCGTCA CCGAGGGCGG CAAGAAGGTC CAGATGGTCA AATGGACGAC CGGCAACCGC GCGCAGTGGT ACGAGGCGTC GGGCGTCGGC GAGACCAAGG GCGTGATGCG CAAGCCGGTG CTGGGCCACC TCACCTCCAG CTTCGGGATG CGCTTCCACC CGATCCTCGG CTTCTCGCGG ATGCACCAGG GCGTCGACTT CGGCGCGCCG ATGGGTTCCC CGATCGTCGC CGCGAGCGAC GGCGTCGTCA CCTTCGCCGG GCGGCATGGC GGCCATGGCA ATTATGTCCG CCTCAACCAT GCCGGCGGCA TCGCCACCGG CTATGCGCAT ATGAGCCGGA TCATCGCCAA GGCCGGCCAG CATGTCCGCC AGGGCGAGCT GATCGGCTAT GTCGGCTCGA CCGGCCTGTC GACCGGCCCG CACCTCCATT ACGAGATGTA TCGCAACGGC AAGGCGATCA ACCCGACCTC GATGAAGTTC ACGACGGTCC AGCAGCTCGC CGGCCGCGAC CTCGCCAATT TCAAGGCGAA GCTCAACGGC CTGCTGTCGG TGCGCGTCGC CCATGGCGCC GGCGCCGAGC CCAAGGCCGA GAAGAGCGCC GAGACCGACG GCAAGGACGA CGGCAAGGGC AGGGGCAAGG CGAAGAAGGG CTGA
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Protein sequence | MFRSDGQDLS AQGYAGGASR GALVVARTNR FPAIGRLIDS PIGDAVDRLA GADLVVDLGA RIGSREWFRG LLTCLGLCTA AGMMAPDFKP IGFVAEPPMS AAHQQQVRTL GIAPLGLGGD TGQRIAATSA VEPLTDTPER PRVELAATIG QGDGFARVLE RAGVSRDEAG KVASMVSDAV PLDDLRAGTR MDLVLGRREV KSDPRPLETL DFRARFDLKL AVERVDGALR LKRIPIAVDH TPLRIQGRVG SSLYRSARAA GVPADAIEAF IKAISQKLSM RSIGSDARFD AIIEHARAET GEVKVGDLLF AGVTEGGKKV QMVKWTTGNR AQWYEASGVG ETKGVMRKPV LGHLTSSFGM RFHPILGFSR MHQGVDFGAP MGSPIVAASD GVVTFAGRHG GHGNYVRLNH AGGIATGYAH MSRIIAKAGQ HVRQGELIGY VGSTGLSTGP HLHYEMYRNG KAINPTSMKF TTVQQLAGRD LANFKAKLNG LLSVRVAHGA GAEPKAEKSA ETDGKDDGKG RGKAKKG
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