Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swit_3512 |
Symbol | |
ID | 5196251 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingomonas wittichii RW1 |
Kingdom | Bacteria |
Replicon accession | NC_009511 |
Strand | - |
Start bp | 3867528 |
End bp | 3868877 |
Gene Length | 1350 bp |
Protein Length | 449 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 640583067 |
Product | type II secretion system protein E |
Protein accession | YP_001263996 |
Protein GI | 148556414 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG4962] Flp pilus assembly protein, ATPase CpaF |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 27 |
Plasmid unclonability p-value | 0.657436 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 9 |
Fosmid unclonability p-value | 0.0925086 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCCTGC TGCTCGACGA TTTCGCGCAA CCCGCCCGCG CGGTCGCGCC GGAACCGGGC GGAGCGGTCG TCGCCTCGCC GGTCAGCCAG CGGATGAGCG ACGCCTATCA GCTCGCCAAG GCGCAGACCT ACGCCCAGGT GATCGAGCAG CTCGAAGCGC GCGGCAACGC GGCCGACGGT CCGGCCAGCC GCCCGCTGCG CGAGGAGATC GAGATCGCGA TCACCAGCCG CAGCCGGCGT GGCCAGCTCG CGCTCAACAG CGCCGAAAGG CTGCTGCTGA TCGAGGACAT CGAGGACGAG GTGAGCGGCT TCGGCCCGCT CGCCCCGCTG CTGCGCGACC CGACCGTCGA CGACATCATC GTCAACGGGC CGCACCGCGT CTATGTCGAG CGGACCGGCA AGCTGACCCG CGTCGAGACG CGCTTCCAGG ACGATGTCCA CCTGATGAAC ATCATCCACC GGATCGTCGG CCAGATCGGC CGGCGGGTCG ACGAGGCGAA CCCCTATGTC GACGCCCGGC TGTCCGACGG CTCGCGCGTC AACATCGTCA TCCCGCCGGT CGCGATCGAC GGACCGATGG TGTCGATCCG CAAGTTCCGG ATGCAGACGA TGTCGATCGC CGACTTCGTC GAGCGCCAGT CGATGAGCGC CGACATGGCC GATTTCCTGG CCGCCGCCGT GCGCGGCCGG CTCAACGTCC TGGTCTGCGG CGGCACCGGC GCGGGCAAGA CCACGTTGCT CAACATGCTG TCGAGCTTCA TCGACGAGAG CCAGCGGCTG ATCACCATCG AGGACGCCGC CGAGCTGCAA TTGCGGCAGA GCCACGTCGT CCGGCTCGAG ACCCGGCCCG GCAATGTCGA GGGCAGCCGC GAGGTCGGTT CGCGCGAGCT GCTGCGCAAC GCGCTGCGGA TGCGGCCCGA CCGGATCATC CTGGGCGAGG TGCGCGGCGT CGAGGCGGTC GAGATGCTCC AGGCGATGAG CACCGGCCAT GACGGGTCGA TGGCGACGAT CCACGGCAAT TCGCCGCGCG ACGCCTTCTC CCGGCTGGAG ATGCTGCTCG GCTTCGCCGG GCTGCAGAAC GACATCCGCG CCACCCGCCG CTTCATCGCC AGCAGCGTCC ACCTGCTCGT CCATGTCCAG CGGCTGACCA ACGGCAGCCG CCGGATCATG TCGGTGACCG AGGTGACCGG CATCGAGGGC GAGGCCTATT CGCTCAACGA ACTGTTCTCG TTCGAGGAGC AGCCGCCCAT GTCCGGGCTC GGCGAGTTCC GCACCTCCTC CTACCGTCCG CATTTCGCTG ACCGCATCGG CAATTATCGC GACGAGCGGA AGGACCAGCG GCTGTGGTGA
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Protein sequence | MSLLLDDFAQ PARAVAPEPG GAVVASPVSQ RMSDAYQLAK AQTYAQVIEQ LEARGNAADG PASRPLREEI EIAITSRSRR GQLALNSAER LLLIEDIEDE VSGFGPLAPL LRDPTVDDII VNGPHRVYVE RTGKLTRVET RFQDDVHLMN IIHRIVGQIG RRVDEANPYV DARLSDGSRV NIVIPPVAID GPMVSIRKFR MQTMSIADFV ERQSMSADMA DFLAAAVRGR LNVLVCGGTG AGKTTLLNML SSFIDESQRL ITIEDAAELQ LRQSHVVRLE TRPGNVEGSR EVGSRELLRN ALRMRPDRII LGEVRGVEAV EMLQAMSTGH DGSMATIHGN SPRDAFSRLE MLLGFAGLQN DIRATRRFIA SSVHLLVHVQ RLTNGSRRIM SVTEVTGIEG EAYSLNELFS FEEQPPMSGL GEFRTSSYRP HFADRIGNYR DERKDQRLW
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