Gene Swit_3427 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwit_3427 
Symbol 
ID5199027 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSphingomonas wittichii RW1 
KingdomBacteria 
Replicon accessionNC_009511 
Strand
Start bp3759238 
End bp3760524 
Gene Length1287 bp 
Protein Length428 aa 
Translation table11 
GC content71% 
IMG OID640582974 
ProductMscS mechanosensitive ion channel 
Protein accessionYP_001263911 
Protein GI148556329 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG3264] Small-conductance mechanosensitive channel 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value0.259375 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value0.309045 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGAATTCT TCGTCCTGCC CAGCCTGGGC GACCGCGCCA TCCAGCAGGC GCTGCTCGCC 
GCCCTGATCG CGGCCGGCTC CTTCGCGGCC GGGCAACTGG CGGCGAAGCT GCTGGGCCCG
GCGATCCTGC GGCGCTGGCG CCGGGGCGAC GCGCAGGAGG AGGCCCGCCT CGCGCCGCCG
CTCTGCGCCA TCATCCGGTC GGCCGTCGCG CTGGTCCTGC TGATCGCGGC GAGCGCGTTG
CGGCTGGACG AGCTGGCCGC GCAACTGCTG CTGGCGGCGG CGACCGGCCT CGCCGCCGGC
CTGCTCGCCC GGCGCATCGC GCGCGGCGCG GGCCTCGCGG CCGGGGTCGC CTGGCTAATC
GGCCTGTGCG CCTTCGTCGG CGCCATGGCC GGGGTGCTGC GCGGGCTGGA ACCGCTGCTG
GAAGGGCTGA GCGCGGCCAG CCTGCCGGTC GGCTCGCGGC GCATCAGCCT GCTCGGGGTG
CTCAACGGAA TCGTCGTCGT CGCGCTGCTG TTCGCGGGGA CCCGCCTCGC CATCCGGCTG
ATCGGCCGCT CGATCGAGCA GGCCCGCAGC CTCGATCATT ACCAGCGCGT CCTCATCCAG
AAGCTGGTCG CGGTGACGCT GGTCGTCGTC GCCGCGCTGA TGGGCATCGA CCTGCTCGGC
ATCGACCTGA CTGCCCTCGC GGTCTTCTCG GGCGCCTTCG GCCTCGCGGT CGGCTTCGGC
CTGCAGAAGA CCTTCGGCAA TTTGCTGTCG GGCCTGATCC TGCTGATGGA CCGATCGGTG
AAGCCGGGCG ACGTGATCGT CGTCGGCGAC ACCTTCGGCT GGGTCAACAA GATCGGGGTG
CGCGCGGTGT CGGTCATCAC CCGCGACGGC AAGGAGCATC TGATCCCCAA CGAGCTGCTG
ATGACCGAGC GGGTCGAGAA CTGGTCCTAT TCCAGCCGCG ACGTCCGCAT CCGCATCCCG
CTCGGCGTCG GCTATGACAG CGACCTCGAC CTCGCCGAGA AGTTGATGAT CCAGGCGGCG
ACCGAGTCCG CGCGAGTGCT GGCCGCGCCC CCGCCCAATG TGTGGCTGCG CGCGTTCGGC
GAGCGCTGGG TCGAATATGA CATCCTCGTC TGGATCCAGG ACCCCGAGCA GGGCGTCGGC
AACGTCCAGT CGGACATCCT CGGCCGCATC TGGCGACTGT TCCGCGAGAA CGGCATCACC
ATCCCGCCGC CGCGCCGCGA CGTCCACATC AAGTCGCTGC CCGAATCATG GACCGACCGC
CGCCCGGACG CCGGCCCGTC CGCCTGA
 
Protein sequence
MEFFVLPSLG DRAIQQALLA ALIAAGSFAA GQLAAKLLGP AILRRWRRGD AQEEARLAPP 
LCAIIRSAVA LVLLIAASAL RLDELAAQLL LAAATGLAAG LLARRIARGA GLAAGVAWLI
GLCAFVGAMA GVLRGLEPLL EGLSAASLPV GSRRISLLGV LNGIVVVALL FAGTRLAIRL
IGRSIEQARS LDHYQRVLIQ KLVAVTLVVV AALMGIDLLG IDLTALAVFS GAFGLAVGFG
LQKTFGNLLS GLILLMDRSV KPGDVIVVGD TFGWVNKIGV RAVSVITRDG KEHLIPNELL
MTERVENWSY SSRDVRIRIP LGVGYDSDLD LAEKLMIQAA TESARVLAAP PPNVWLRAFG
ERWVEYDILV WIQDPEQGVG NVQSDILGRI WRLFRENGIT IPPPRRDVHI KSLPESWTDR
RPDAGPSA