Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swit_3427 |
Symbol | |
ID | 5199027 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingomonas wittichii RW1 |
Kingdom | Bacteria |
Replicon accession | NC_009511 |
Strand | - |
Start bp | 3759238 |
End bp | 3760524 |
Gene Length | 1287 bp |
Protein Length | 428 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 640582974 |
Product | MscS mechanosensitive ion channel |
Protein accession | YP_001263911 |
Protein GI | 148556329 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3264] Small-conductance mechanosensitive channel |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 0.259375 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 0.309045 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGAATTCT TCGTCCTGCC CAGCCTGGGC GACCGCGCCA TCCAGCAGGC GCTGCTCGCC GCCCTGATCG CGGCCGGCTC CTTCGCGGCC GGGCAACTGG CGGCGAAGCT GCTGGGCCCG GCGATCCTGC GGCGCTGGCG CCGGGGCGAC GCGCAGGAGG AGGCCCGCCT CGCGCCGCCG CTCTGCGCCA TCATCCGGTC GGCCGTCGCG CTGGTCCTGC TGATCGCGGC GAGCGCGTTG CGGCTGGACG AGCTGGCCGC GCAACTGCTG CTGGCGGCGG CGACCGGCCT CGCCGCCGGC CTGCTCGCCC GGCGCATCGC GCGCGGCGCG GGCCTCGCGG CCGGGGTCGC CTGGCTAATC GGCCTGTGCG CCTTCGTCGG CGCCATGGCC GGGGTGCTGC GCGGGCTGGA ACCGCTGCTG GAAGGGCTGA GCGCGGCCAG CCTGCCGGTC GGCTCGCGGC GCATCAGCCT GCTCGGGGTG CTCAACGGAA TCGTCGTCGT CGCGCTGCTG TTCGCGGGGA CCCGCCTCGC CATCCGGCTG ATCGGCCGCT CGATCGAGCA GGCCCGCAGC CTCGATCATT ACCAGCGCGT CCTCATCCAG AAGCTGGTCG CGGTGACGCT GGTCGTCGTC GCCGCGCTGA TGGGCATCGA CCTGCTCGGC ATCGACCTGA CTGCCCTCGC GGTCTTCTCG GGCGCCTTCG GCCTCGCGGT CGGCTTCGGC CTGCAGAAGA CCTTCGGCAA TTTGCTGTCG GGCCTGATCC TGCTGATGGA CCGATCGGTG AAGCCGGGCG ACGTGATCGT CGTCGGCGAC ACCTTCGGCT GGGTCAACAA GATCGGGGTG CGCGCGGTGT CGGTCATCAC CCGCGACGGC AAGGAGCATC TGATCCCCAA CGAGCTGCTG ATGACCGAGC GGGTCGAGAA CTGGTCCTAT TCCAGCCGCG ACGTCCGCAT CCGCATCCCG CTCGGCGTCG GCTATGACAG CGACCTCGAC CTCGCCGAGA AGTTGATGAT CCAGGCGGCG ACCGAGTCCG CGCGAGTGCT GGCCGCGCCC CCGCCCAATG TGTGGCTGCG CGCGTTCGGC GAGCGCTGGG TCGAATATGA CATCCTCGTC TGGATCCAGG ACCCCGAGCA GGGCGTCGGC AACGTCCAGT CGGACATCCT CGGCCGCATC TGGCGACTGT TCCGCGAGAA CGGCATCACC ATCCCGCCGC CGCGCCGCGA CGTCCACATC AAGTCGCTGC CCGAATCATG GACCGACCGC CGCCCGGACG CCGGCCCGTC CGCCTGA
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Protein sequence | MEFFVLPSLG DRAIQQALLA ALIAAGSFAA GQLAAKLLGP AILRRWRRGD AQEEARLAPP LCAIIRSAVA LVLLIAASAL RLDELAAQLL LAAATGLAAG LLARRIARGA GLAAGVAWLI GLCAFVGAMA GVLRGLEPLL EGLSAASLPV GSRRISLLGV LNGIVVVALL FAGTRLAIRL IGRSIEQARS LDHYQRVLIQ KLVAVTLVVV AALMGIDLLG IDLTALAVFS GAFGLAVGFG LQKTFGNLLS GLILLMDRSV KPGDVIVVGD TFGWVNKIGV RAVSVITRDG KEHLIPNELL MTERVENWSY SSRDVRIRIP LGVGYDSDLD LAEKLMIQAA TESARVLAAP PPNVWLRAFG ERWVEYDILV WIQDPEQGVG NVQSDILGRI WRLFRENGIT IPPPRRDVHI KSLPESWTDR RPDAGPSA
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