| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_3399 |
|---|
| Symbol | |
|---|
| ID | 5201013 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | - |
|---|
| Start bp | 3729855 |
|---|
| End bp | 3731579 |
|---|
| Gene Length | 1725 bp |
|---|
| Protein Length | 574 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 640582946 |
|---|
| Product | AMP-dependent synthetase and ligase |
|---|
| Protein accession | YP_001263883 |
|---|
| Protein GI | 148556301 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.00771865 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGTCGATGC GCGCAGACGA ATATGAAATG ATCCGAAGCC GGCTCACCGC ACCGGGCTCC
GTGTTCGAAG TGGTGCCGGC TGAGATTGGC GGCCGAACCT ATAAAAGTTG GGCGCAGGCG
CCCACGACGC TGCGCGCGAT CCTGGAACGC AGCCGCAGCT TCGGCGATCA GACCTTCATC
GTCTTCGAAG ACGAGCGGCT GAGCCATGCC GCGCATGTCG AGCGTGTCGC GCGTTGCGCA
TCGGCGCTTC GGGCTCGGTA CGGCATCGGC AAGGGGGACC GGGTGGCGAT CGCAATGCGC
AATCTGCCCG AATGGTCGAT CGCCTTTTGG GCGGTCGTAT CACTCGGCGC CGTCGCCGTG
TCGATCAATG CCTGGATGAC GGGGCCGGAA ATGCAGTTCT GCATCGGCGA CAGCGGCAGC
CGGCTGCTGA TCGCCGACGA CGATCGCATC GAGCGGCTGG GCGATCGCCT GTCCGATCTC
GCGCTGGAGG CGGTAATCGC CGTCCGGTCG CAGAATGGCA GCGATCCACG CATCACTCCC
TGGCAGACGC TGGAGACCGG CGATGGTCCG GCAATATTGC CGCCGGTCAC GATCCTGCCG
GATGACGATG CGACGATCCT CTACACATCA GGCACAACGG GCAATCCCAA GGGGGCGCTC
GGTACCCATC GCGGCAGTTG CAACAATGTG ATCACCACGC GCTACTTCAA CGCCGTCGAT
GCCGTATCGC GCGGCACGGC CGTGGAGACC CTCAGCCTCG ATGGCCGGAA CAACGCCTTC
TTGCTCACCA TCCCGCTCTT TCATGGCGCC GGGTGCCAGA ATGGCCTGAT TTTCAGCGTC
TTCGGCGGCG GCAAGATGGT GATGATGCCG CGCTGGGATG CACAACGCGC GCTCGATACG
ATTGCGGCGG AACAGATTAC GGACATGGTC GCGACCCCGG CGCATTTCGT GCAACTGCTC
GACCTCGTCG ATGCGACGCC CGGACGGCAT GCCATTGGTT CGGTCGAAAC GGTGCTGGTC
GGCGGCGCGT CGCCCCCGGC GGATTTGCCG GCGCGCATCC ATGCGGCAAT GCCGAAGGCG
GCGGTCGGCA CCGGCTATGG GCAAACCGAG TGCACGCAGA TCGCGACGCT CTCCTGTGGC
AGCGACTATA TCGAGCATCC GAAAAGCTGT GGGCGTCCGG TTCCGATCTG CGACATCCGC
ATCGTCGATG ATGCCGGCGC CGAGGTCGCG GCCGGACAGA CCGGAGAATT GCTGCTCTCC
ACCTCGACGC TGGTCAAAGC CTATGTGAAC CGGCCGGCGG AAACGGCGGA AACCTTCGTC
GACGGCTGGT TGAAGACAGG AGACCTCGTC CATCTCGACG CGGACGGCCG GATGCACATC
GACGATCGCA AGAAGGATAT GGTGATCCGT GGCGGCGAGA ATATCTACTG CATCGAGGTG
GAACAGGCGC TGTACAGCCA TCCCGACGTC GAGGAAGCTG CGGTGTTCGG CCTTCCCCAT
CCGGTGCTGG GCGAGGAGCC TTATGCCATG GTGTTCCTCC GGGCCAACAG CGACGCCTCC
GATCCGGCTC TGCGCGCTCA TGCGGGCGAA CGGCTCGCCA AGTTCAAGAT CCCTGTCGAA
ATTCGACCGA GCGCCGCGCC ATTGCCGCGC AATGCCAACG GCAAGATCCT GAAACGCGAA
TTGCGTGCGG CCTGGATTGC CGAGCGCATG GCAAACCCCA ATTGA
|
|---|
| Protein sequence | MSMRADEYEM IRSRLTAPGS VFEVVPAEIG GRTYKSWAQA PTTLRAILER SRSFGDQTFI
VFEDERLSHA AHVERVARCA SALRARYGIG KGDRVAIAMR NLPEWSIAFW AVVSLGAVAV
SINAWMTGPE MQFCIGDSGS RLLIADDDRI ERLGDRLSDL ALEAVIAVRS QNGSDPRITP
WQTLETGDGP AILPPVTILP DDDATILYTS GTTGNPKGAL GTHRGSCNNV ITTRYFNAVD
AVSRGTAVET LSLDGRNNAF LLTIPLFHGA GCQNGLIFSV FGGGKMVMMP RWDAQRALDT
IAAEQITDMV ATPAHFVQLL DLVDATPGRH AIGSVETVLV GGASPPADLP ARIHAAMPKA
AVGTGYGQTE CTQIATLSCG SDYIEHPKSC GRPVPICDIR IVDDAGAEVA AGQTGELLLS
TSTLVKAYVN RPAETAETFV DGWLKTGDLV HLDADGRMHI DDRKKDMVIR GGENIYCIEV
EQALYSHPDV EEAAVFGLPH PVLGEEPYAM VFLRANSDAS DPALRAHAGE RLAKFKIPVE
IRPSAAPLPR NANGKILKRE LRAAWIAERM ANPN
|
|---|
| |