Gene Swit_3336 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwit_3336 
Symbol 
ID5199892 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSphingomonas wittichii RW1 
KingdomBacteria 
Replicon accessionNC_009511 
Strand
Start bp3664922 
End bp3667147 
Gene Length2226 bp 
Protein Length741 aa 
Translation table11 
GC content68% 
IMG OID640582881 
ProductTonB-dependent receptor 
Protein accessionYP_001263820 
Protein GI148556238 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG1629] Outer membrane receptor proteins, mostly Fe transport 
TIGRFAM ID[TIGR01783] TonB-dependent siderophore receptor 


Plasmid Coverage information

Num covering plasmid clones32 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0286811 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAACGCG TGCTTCTGTC CGCAGCAGCC TCAATCGCAG CCATCGCCAC CGCCGGAACG 
GGCACCGCAT TCGCGCAGAA TGTCGTCGAC GCCCAGGATG CCGACGGCGT GCCCGACATC
GTCGTCACCG CGACCCGCAT GGGCGAGACC CAGCTCCAGT CGACGCCGAT CGCGGTGACC
GCGCTGGGCG GCGACCAGCT CGACGCGCGC GGGGTGCGCG ACGTGCAGGA CCTGAAGGCC
TATGTCCCCT CGCTCCAGGT GTCGGACCTG TCGGGCTACA CCCAGCTCTT CATCCGCGGC
ATCGGATCGA ACATCGTCTT CATCGGCTCC GATCCCAGCA CGACGATCCA CAGCGACGGC
ATCTATCTCG CCCGGCCGCT CAGCTATCTC ACCGACTTCC TCGACGTCGA GCGGGTCGAG
GTGCTGCGCG GGCCGCAGGG CACGCTCTAC GGCCGCAACT CGGTGGGCGG CACGATCAAC
GTCGTCTCGC GCAAGCCGTC CGACACGCTG CAGGCGCAGG CGCAGTTCGG CTATGGCAGC
TATGACCGCT ATGCCGCGCA GGGCTATGTC TCCGGCCCGA TCGCGGGCGG GGTGCGGGCG
AGCCTCGCGG TCGACGTCTC CGGCCACGAC GCCTTCCGCA AGAACATCTC GACCGGCAAC
GACGCCGAGG ACCTGAAGTC GCGCGGCGTG CGCGGCCAGC TGCTGATCCC GGTCGGCGAC
GGCGAATGGA CGATCCGCGC CGACTGGTCG CGCCAGTCGG GCGCGTTCGG CGCCTATCCC
AAGCTGATCC GGCCGACCGG CAACCCGTTC GACGACGCGA TCCTCGGCGA TTTCGACAAG
GTGTCGATGA ACCGCGACAA TTTCACCGTG CTCAAGAATT ACGGCGCGGC GAGCGACCTG
GTGCTGCCGC TGACCGACTC GATCAAGCTG CGCTCGCTGA CCGGCTACCG CGCCTTCCGC
GGCTCGATCG AGACCGACGC CGACGCCAGC TCGATCGACA TATTGCGCAA CCTGATCTCG
CCGATCCGGC AGCACCAGTT CAGCCAGGAG TTCACCCTGC TGGGCGACAC CGGCCCGCTC
GAATGGGTGC TCGGCGCCTA TTATTTCAAC GAGCGCAACC GCGAGCCGCT GACCCTCGCG
CTGTTCCCGT TCGGCGCGTC GCACATCCAG CGGCCGCTGC TCAAGGCACG CTCGATCGCG
GGCTTCGCGC AGGGCGAGTA CAAGCTGTCC GACCAACTCT CCTTCATCGC CGGCCTGCGC
TACACGCGCG AGCGCAAGGC CTATGCGATC AGCGACTATT TCACCGCCTC GACCGATCTC
GACCCGGCGG TGGCGGAGAA GGGCTTCGTG CTGGCCGGCA TCCCCGGCCT GCCCGATCCG
TTCACCGTCG ACGCGCGCCG CCACGACGAC GCCTTCACGC CGAAATTCGG GATCACCTTC
AAGCCCACCG AGCAGGTTCT GCTCTACGCA TCGGCGACGC GCGGCTTCAA GAGCGGCGGC
TTCGACTATG GCAGCAGCAA CGCGGCCGAC GCCGCTGCGG GCTACGGCCC CGAAAAGCTC
TGGTCCTACG AGCTCGGGCT GAAGAGCGAC TGGCTCGACC GGCGGCTGCG GGTCAACCTG
ACCGGCTTCT ACTACGACTA TACCGACCTG CAGGTGCAGA GCTACGTCCA GATCGGCGCC
TCGTTCGGCG CGCGGACCCA GAATGCGGCG ACCGCGCGGG TGAAGGGCCT CGAGGCGGAG
ATCGTCGCCC GCCCGGTCCG CGCGCTCGAA CTGTCGGCGA ACGTCGCCTG GCTCGACGCC
GAATATCGCC GCTACCCCAA CGCCTTCGTC AGCTCCTTCG GCGCGTTCGA CGCATCGGGC
AAGCGGCTGA ACAACGCGCC GCGCTGGTCG GCCACCTTCG GCGCGGCCTA CAGCTTCGAC
CTGGCCGGGT CGGGCAAGCT GACGCTGGGC GCCGACGCGC ATGTCCAGAG TAGCATCTAC
TTCACCGCCG CCAATGACGG GGTGGGCGCG GTCTCCGGCT ATGCCGAGCA GCAGAAGGGC
TATGGCATCG TCAACGCGCG GATCGGCTGG ACCAGCCCCG ACGACCGCTG GAAGGCGCAG
CTGATCGCCA GCAACCTGTT CGACAAGGAC TATATCGTCG GCACCGCCAA CTACACCGCC
GCGATCGCCG CCCGGCAGGG CCGCCCGCGC GAGGTGCTGG TCCAGATCGG CTACGCCTTC
CGGTGA
 
Protein sequence
MKRVLLSAAA SIAAIATAGT GTAFAQNVVD AQDADGVPDI VVTATRMGET QLQSTPIAVT 
ALGGDQLDAR GVRDVQDLKA YVPSLQVSDL SGYTQLFIRG IGSNIVFIGS DPSTTIHSDG
IYLARPLSYL TDFLDVERVE VLRGPQGTLY GRNSVGGTIN VVSRKPSDTL QAQAQFGYGS
YDRYAAQGYV SGPIAGGVRA SLAVDVSGHD AFRKNISTGN DAEDLKSRGV RGQLLIPVGD
GEWTIRADWS RQSGAFGAYP KLIRPTGNPF DDAILGDFDK VSMNRDNFTV LKNYGAASDL
VLPLTDSIKL RSLTGYRAFR GSIETDADAS SIDILRNLIS PIRQHQFSQE FTLLGDTGPL
EWVLGAYYFN ERNREPLTLA LFPFGASHIQ RPLLKARSIA GFAQGEYKLS DQLSFIAGLR
YTRERKAYAI SDYFTASTDL DPAVAEKGFV LAGIPGLPDP FTVDARRHDD AFTPKFGITF
KPTEQVLLYA SATRGFKSGG FDYGSSNAAD AAAGYGPEKL WSYELGLKSD WLDRRLRVNL
TGFYYDYTDL QVQSYVQIGA SFGARTQNAA TARVKGLEAE IVARPVRALE LSANVAWLDA
EYRRYPNAFV SSFGAFDASG KRLNNAPRWS ATFGAAYSFD LAGSGKLTLG ADAHVQSSIY
FTAANDGVGA VSGYAEQQKG YGIVNARIGW TSPDDRWKAQ LIASNLFDKD YIVGTANYTA
AIAARQGRPR EVLVQIGYAF R