| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_3248 |
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| Symbol | |
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| ID | 5196532 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingomonas wittichii RW1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009511 |
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| Strand | + |
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| Start bp | 3578412 |
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| End bp | 3579521 |
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| Gene Length | 1110 bp |
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| Protein Length | 369 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 640582793 |
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| Product | histone deacetylase superfamily protein |
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| Protein accession | YP_001263732 |
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| Protein GI | 148556150 |
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| COG category | [B] Chromatin structure and dynamics
[Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG0123] Deacetylases, including yeast histone deacetylase and acetoin utilization protein |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 29 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.000895974 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGCCCGCA CCGGTTTCTA CACCGACGAA CGCACCTTCT GGCACGCGAC CGGCATGCAG
GCGCTGTTCC TGCCGGTCGG CGACTGGGTG CAGCCGCCCA ACGGCACGGC GGGCGCCGAC
ACGCCCGATT CGAAGCGCCG CCTGCTCAAC CTCGCCCATG CGTCGGGGCT GATCCGCAAG
CTGACGCTGC CCGAGGCGAT CCCGGCGACG GTCGAGGACG TCTGCCGCGT CCACCCGCGC
GACTATATCG ACCGCTTCAA GGCGACGAGC GACGCGGGCG GCGGCGACCT CGGCCATCTC
GCGCCGTTCA GCAAGGGCGG CTATGAGATC GCGATGCTGT CGTGCGGGCT CGCCATCGCG
GCGGTCGACG ACGTGCTGAG CGGCAAGGTC GACAACGCCT ATGCGCTGTG CCGCCCGGCC
GGGCACCACT GCCTCGCCGA CACGCCGATG GGCTTCTGCC TGCTCGCCAA TATCCCGATC
GCGATCGAGG CGGCGAAGGC GCGCCACGGC ATCTCGCGGG TCGCGGTGGT CGACTGGGAC
GTCCATCACG GCAACGGCAC CCAGTCGATC TTCTACGATC GCGCCGACGT GCTCACCATC
TCGATCCACC AGGACCGCTG CTTCCCGCCG GGCTATAGCG GCGCGGAGGA TCGCGGCGAG
GGCGCGGGGC TCGGCTACAA CCTCAACGTG CCGCTGCCCG CCGGGGCCGG ACACGACGCC
TATGTCCAGG CGTTCGACAA CATCGTCGTC CCGGCGCTCG ACGACTTCAA GCCCGAGCTG
ATCATCGTCG CCAGCGGCCT CGACGCGAAC AGCGTCGATC CGCTCGCCCG CATGCTGCTC
CACAGCGAGA GCTATCGCCT GCTGACGCAG AAGATGCTCG ACGCCGCGGC GCGGCTGTGC
GGCGGCAAGC TCGTCGTCGT CCATGAGGGC GGCTATGCCG AGGCCTATGT CCCCTTCTGC
GGCCATGCCC TGCTCGAGGC GCTGAGCGGC GAACGCACGG CGGTGGTCGA TCCGGTGCTG
GAGATGGCCG AGGCGTGGCA GCCGGGGCCC GAGGCCGCCG CCTTCCACCG CCAGTGGATC
GATCGCCTCG TCGCGGACCT CAGGAAGTGA
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| Protein sequence | MARTGFYTDE RTFWHATGMQ ALFLPVGDWV QPPNGTAGAD TPDSKRRLLN LAHASGLIRK
LTLPEAIPAT VEDVCRVHPR DYIDRFKATS DAGGGDLGHL APFSKGGYEI AMLSCGLAIA
AVDDVLSGKV DNAYALCRPA GHHCLADTPM GFCLLANIPI AIEAAKARHG ISRVAVVDWD
VHHGNGTQSI FYDRADVLTI SIHQDRCFPP GYSGAEDRGE GAGLGYNLNV PLPAGAGHDA
YVQAFDNIVV PALDDFKPEL IIVASGLDAN SVDPLARMLL HSESYRLLTQ KMLDAAARLC
GGKLVVVHEG GYAEAYVPFC GHALLEALSG ERTAVVDPVL EMAEAWQPGP EAAAFHRQWI
DRLVADLRK
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