| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_3246 |
|---|
| Symbol | |
|---|
| ID | 5196530 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | + |
|---|
| Start bp | 3574621 |
|---|
| End bp | 3576315 |
|---|
| Gene Length | 1695 bp |
|---|
| Protein Length | 564 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 640582791 |
|---|
| Product | amidohydrolase 3 |
|---|
| Protein accession | YP_001263730 |
|---|
| Protein GI | 148556148 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1574] Predicted metal-dependent hydrolase with the TIM-barrel fold |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 5 |
|---|
| Fosmid unclonability p-value | 0.00403694 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGATGGGTG TGGCAGCCAG GGCGACGGCG CTCGGGGCGA TGCTCCTGGC CGGCGCGGCG
ATGGCCGAGG CGCCGGCCGA CACGATCCTG CTCAACGGGC AGGTCTACAC CCCCGGCGGC
TGGGCCGAGG CGCTGGCGAT CCGCGACGGC GTGATCGTCG CGGTCGGCGA CGCCAAGGCG
GCGGAGGCCT GGCGCGGCGC GGCGTCGAAG GTCGTCGACC TGAAGGGCGC GGCGGTGTTC
CCCGGCCTCC ACGACATGCA CGTCCACACC CAGTTCGCCG GGCTCGAACA GTTCGCCTGC
GGCTTTCCCA ACGCCGCCAA GCCGGCGGTG ATCGCGGCCC GGATCAAGCA ATGCGCGGCA
AAGGCCGAGC CGGGCGCCTG GATCGTCGGC GGCAACTGGT CGGCCGGCTC CTTCGCCAAG
GGCCAGCAGA ACCGCGGCTT CCTCGACAAG GTCGCGCCGA ACAACCCGGT GCTGCTGTCG
GACGAGGCGC ACCACAGCCT GTGGGCGAAC AGCAAGGCGA TCGCCGCGGC GGGCGTCACC
CGCGACACCA GGGACCCGGC CGGCGGCATC ATCGAGCGCG ACGCGAAGGG CGAGCCCAAC
GGCCTGTTCC GCGAGAATGC GGCGGGCCTG CTCGACAAGG CGATGCCCGA GCCGTCCGAC
GCGCTGAAGC GCAAGGCGAT GACGCTGTCG ACGCGGCAGA TGCTGTCCTA CGGCATCACC
TCCTTCACCG ACGCCTCGGT CCGGGTCGGC AATGTCCGCA CCCTGTCCGG GCTGGCGCGC
GACGGCATCA TCAAGCAGCG CGCGCGCGGC TGCATCGTCT GGTCGCCCGG CGACGCCAAT
GGCGAGATGC TGATCCGCAC CCGCGCCGAC TATACGGTCG GCCGCTTCAA GGCCGACTGC
GTCAAGGTCT TCATGGACGG CGTGCCGACC GAGAGCCAGA CGGCGGCGAT GCTGCATCCC
TATCATGGCG ATCCGCACGG GACCGGCATC CTGATGATCC CGCAGGCCGC GCTCAACGAC
GGCATCGCGC GGTTCGACCG CATGGGCCTC CACGTCAAGT TCCACGCCGT CGGCGACGCG
GCGGTGCGGT CGGCGCTCGA CGCGGTCGAA CATGCCCGCA AGGTCAACGG CTGGGGCGGG
TCGGCGCACG AGGTCGGCCA CAACACGTTC GTCGACCGCG CCGACATCCC GCGCGTGCGG
GCGCTGCACA TGACCTGGGA GTTCTCGCCC TATATCTGGT ATCCGACGCC GATCACCGAC
GTCGACGTCC GCAACGCGGT CGGCGACGAG ATGATGAAGC GCTTCATCCC GATCAAGGAG
GCGCTCGACA CCGGCGCCAA CGTCATCGCC GGCTCCGACT GGTCGGTGGT TCCGTCGGTC
AATCCCTGGA TCGCGATCGA GACGATGGTG ACGCGCCAGA AGCCGGGCGG CGGCGACAAG
ACGATCGCCC CCGACGAGCG CGTCACGCTC GACCAGGCGC TGCGCATCTT CACGTCGGAC
GCGGCGGCGG CGATGGGCGA TCGCGATCAG GTCGGCTCGA TCGAGCCCGG CATGCATGCC
GACATCGTCG TGACCGAGAC CAACCCGTTC AAGGTTCCGG CCACCCAGAT CCACGACACC
AGGGTCCGCA TGACCTTCAT CGACGGCGAA CTGGTCTATG ACGCGGCCAA TCCGCCGCCG
CTGACTGCCG ACTGA
|
|---|
| Protein sequence | MMGVAARATA LGAMLLAGAA MAEAPADTIL LNGQVYTPGG WAEALAIRDG VIVAVGDAKA
AEAWRGAASK VVDLKGAAVF PGLHDMHVHT QFAGLEQFAC GFPNAAKPAV IAARIKQCAA
KAEPGAWIVG GNWSAGSFAK GQQNRGFLDK VAPNNPVLLS DEAHHSLWAN SKAIAAAGVT
RDTRDPAGGI IERDAKGEPN GLFRENAAGL LDKAMPEPSD ALKRKAMTLS TRQMLSYGIT
SFTDASVRVG NVRTLSGLAR DGIIKQRARG CIVWSPGDAN GEMLIRTRAD YTVGRFKADC
VKVFMDGVPT ESQTAAMLHP YHGDPHGTGI LMIPQAALND GIARFDRMGL HVKFHAVGDA
AVRSALDAVE HARKVNGWGG SAHEVGHNTF VDRADIPRVR ALHMTWEFSP YIWYPTPITD
VDVRNAVGDE MMKRFIPIKE ALDTGANVIA GSDWSVVPSV NPWIAIETMV TRQKPGGGDK
TIAPDERVTL DQALRIFTSD AAAAMGDRDQ VGSIEPGMHA DIVVTETNPF KVPATQIHDT
RVRMTFIDGE LVYDAANPPP LTAD
|
|---|
| |