Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swit_3242 |
Symbol | |
ID | 5197275 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingomonas wittichii RW1 |
Kingdom | Bacteria |
Replicon accession | NC_009511 |
Strand | + |
Start bp | 3567762 |
End bp | 3569483 |
Gene Length | 1722 bp |
Protein Length | 573 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 640582787 |
Product | amidohydrolase 3 |
Protein accession | YP_001263726 |
Protein GI | 148556144 |
COG category | [R] General function prediction only |
COG ID | [COG1574] Predicted metal-dependent hydrolase with the TIM-barrel fold |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 0.077662 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 6 |
Fosmid unclonability p-value | 0.0113117 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGTTTCAG GCTCGGCCGG GATTCGGAAG GGAATCCGGC GAATGATGGT GGCGGGGCCG ATCCTGATCG CGTCGATGGC CTCCGGCACC GCGCAGGCGG CCGATTTCAT CCTGAGCGGC GGGGAAATCT ACACCCCCTC GGGATGGGTC GATGCGATCG CGGTGCAGGG CGACCGCATC GCCGCCGTCG GCGATGGGGC CGCGCTGAAA AAACGCTATC CGGCGATCAC CACCATCGTC GATCTTGCCG GCAAGACCGT GATGCCCGGC CTCCACGACA TGCATGTCCA CCCGCTCGGG GCCGGGCTTT CGCTCCAGCA ATGCAAGTTC GAGCAGGGGT CGACGCCGCA GCAGATCCTC GACGCCGTCA CGGCCTGCGT GAAGAAGGCC AAACCGGGCG CATGGATCGT CGGCGGACAA TGGGCGGCGA GCTCGTTCGG CGACACCCCT CCCAACCGGC AGATGCTGGA CGCGATCGCT CCGAACAATC CGGTCTCGCT GACCGATATC AGCGGCCACA GCAGCTGGGC CAACAGCCTG GCGCTGAAGG CCGCGGGCAT CGCGCGCGGC ACGCCCGATC CCAAGGGCGG GATCATCGAA CGCGACGCAT CGGGCGAACC GAACGGCCTG TTGCGCGAAA GCGCGGCCCA TCTCGTCCGC CAGAAGATTC CGGCGCCGAG CGCGGAGGAC AATGTCCGGG CCTTGAAGAC CGGCATCGAC ATGCTCGTCT CCTACGGCGT CACCGCGCTC GTCGACGCGG TGGTCACCCC CGATGGGCTG TCGGCCTATC AGACGCTGAC GGCGCGCAAC CAGCTCAAGG CGCATGTCCG CGGCTGTCTC GTCTACGGGC GCACATGGGG CGACAACAGC GCCTTCGACC GGACGATCGC CGATCGCGAG CGCTACGGCT CGGACCGCTT CAAGCTCGAT TGCGTCAAGG TCTTCGAAGA CGGCGTTCCG ACCGAAAGCC ACACCGCGGC CCTCATCGAT CCCTATGCCC CCGACGAGCA TGGCGAGGTC AAGGAGCCGA AGCGCGGCCT GCTGCTCGTC CAGCCTGCGG AACTCGATCC GCTGGTCACC CGGCTCGACA AGATGGGCGT CACGGTCAAG TTCCACGCGG CCGGCGACCA GGCCTCGCGC ACCGCGCTCG ACGCCATCGC CGCGGCGCGC AAGGCCAATG GCCCCGACGG ACCCACCCAT GACGTCGGCC ACCTGACCTT CATCCAGCCC GAGGACATGA AGCGCGCCAA GGCGATCCGG GCGACGCTCG AATTCTCGCC CTATCTGTGG TTCCCGTCGC CGATCAACGA CGACATCATC AAGGCTTCCG GCGCCGAGCG CATCAAGCGC GTCTGGCCGG TGCGCGAGGG GCTGGATTCG GGGGCGCTGG TCGTCGCCGG CTCCGACTGG TCGGTGATTC CGTCGGCCAA TCCCTGGATC GGCATCGAGA CGCTGGTGAC GCGCAAGGCG CCCGACAATC AGCGCCCCGG CGAGGTCTAT GGCCCGGACG AAGCGATCAC CCTCAAGGAA GCGATCGACA TCTTCACGAT CAACGCCGCC AGGCAGTTCG GCTATGCCGA CAGCCACGGC ACGATCGAGG CCGGCAAGGT CGCCGACTTC ATCGTCCTCG ATCGCAATCC GTTCAAGATC GCCGCTACCG ATCTTCACAA CGTCGTCGTC ACGCAGAGCT ATGTCGGCGG CGAACTGATC TACGCGAAAT AG
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Protein sequence | MVSGSAGIRK GIRRMMVAGP ILIASMASGT AQAADFILSG GEIYTPSGWV DAIAVQGDRI AAVGDGAALK KRYPAITTIV DLAGKTVMPG LHDMHVHPLG AGLSLQQCKF EQGSTPQQIL DAVTACVKKA KPGAWIVGGQ WAASSFGDTP PNRQMLDAIA PNNPVSLTDI SGHSSWANSL ALKAAGIARG TPDPKGGIIE RDASGEPNGL LRESAAHLVR QKIPAPSAED NVRALKTGID MLVSYGVTAL VDAVVTPDGL SAYQTLTARN QLKAHVRGCL VYGRTWGDNS AFDRTIADRE RYGSDRFKLD CVKVFEDGVP TESHTAALID PYAPDEHGEV KEPKRGLLLV QPAELDPLVT RLDKMGVTVK FHAAGDQASR TALDAIAAAR KANGPDGPTH DVGHLTFIQP EDMKRAKAIR ATLEFSPYLW FPSPINDDII KASGAERIKR VWPVREGLDS GALVVAGSDW SVIPSANPWI GIETLVTRKA PDNQRPGEVY GPDEAITLKE AIDIFTINAA RQFGYADSHG TIEAGKVADF IVLDRNPFKI AATDLHNVVV TQSYVGGELI YAK
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