Gene Swit_3242 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwit_3242 
Symbol 
ID5197275 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSphingomonas wittichii RW1 
KingdomBacteria 
Replicon accessionNC_009511 
Strand
Start bp3567762 
End bp3569483 
Gene Length1722 bp 
Protein Length573 aa 
Translation table11 
GC content67% 
IMG OID640582787 
Productamidohydrolase 3 
Protein accessionYP_001263726 
Protein GI148556144 
COG category[R] General function prediction only 
COG ID[COG1574] Predicted metal-dependent hydrolase with the TIM-barrel fold 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value0.077662 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0113117 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGTTTCAG GCTCGGCCGG GATTCGGAAG GGAATCCGGC GAATGATGGT GGCGGGGCCG 
ATCCTGATCG CGTCGATGGC CTCCGGCACC GCGCAGGCGG CCGATTTCAT CCTGAGCGGC
GGGGAAATCT ACACCCCCTC GGGATGGGTC GATGCGATCG CGGTGCAGGG CGACCGCATC
GCCGCCGTCG GCGATGGGGC CGCGCTGAAA AAACGCTATC CGGCGATCAC CACCATCGTC
GATCTTGCCG GCAAGACCGT GATGCCCGGC CTCCACGACA TGCATGTCCA CCCGCTCGGG
GCCGGGCTTT CGCTCCAGCA ATGCAAGTTC GAGCAGGGGT CGACGCCGCA GCAGATCCTC
GACGCCGTCA CGGCCTGCGT GAAGAAGGCC AAACCGGGCG CATGGATCGT CGGCGGACAA
TGGGCGGCGA GCTCGTTCGG CGACACCCCT CCCAACCGGC AGATGCTGGA CGCGATCGCT
CCGAACAATC CGGTCTCGCT GACCGATATC AGCGGCCACA GCAGCTGGGC CAACAGCCTG
GCGCTGAAGG CCGCGGGCAT CGCGCGCGGC ACGCCCGATC CCAAGGGCGG GATCATCGAA
CGCGACGCAT CGGGCGAACC GAACGGCCTG TTGCGCGAAA GCGCGGCCCA TCTCGTCCGC
CAGAAGATTC CGGCGCCGAG CGCGGAGGAC AATGTCCGGG CCTTGAAGAC CGGCATCGAC
ATGCTCGTCT CCTACGGCGT CACCGCGCTC GTCGACGCGG TGGTCACCCC CGATGGGCTG
TCGGCCTATC AGACGCTGAC GGCGCGCAAC CAGCTCAAGG CGCATGTCCG CGGCTGTCTC
GTCTACGGGC GCACATGGGG CGACAACAGC GCCTTCGACC GGACGATCGC CGATCGCGAG
CGCTACGGCT CGGACCGCTT CAAGCTCGAT TGCGTCAAGG TCTTCGAAGA CGGCGTTCCG
ACCGAAAGCC ACACCGCGGC CCTCATCGAT CCCTATGCCC CCGACGAGCA TGGCGAGGTC
AAGGAGCCGA AGCGCGGCCT GCTGCTCGTC CAGCCTGCGG AACTCGATCC GCTGGTCACC
CGGCTCGACA AGATGGGCGT CACGGTCAAG TTCCACGCGG CCGGCGACCA GGCCTCGCGC
ACCGCGCTCG ACGCCATCGC CGCGGCGCGC AAGGCCAATG GCCCCGACGG ACCCACCCAT
GACGTCGGCC ACCTGACCTT CATCCAGCCC GAGGACATGA AGCGCGCCAA GGCGATCCGG
GCGACGCTCG AATTCTCGCC CTATCTGTGG TTCCCGTCGC CGATCAACGA CGACATCATC
AAGGCTTCCG GCGCCGAGCG CATCAAGCGC GTCTGGCCGG TGCGCGAGGG GCTGGATTCG
GGGGCGCTGG TCGTCGCCGG CTCCGACTGG TCGGTGATTC CGTCGGCCAA TCCCTGGATC
GGCATCGAGA CGCTGGTGAC GCGCAAGGCG CCCGACAATC AGCGCCCCGG CGAGGTCTAT
GGCCCGGACG AAGCGATCAC CCTCAAGGAA GCGATCGACA TCTTCACGAT CAACGCCGCC
AGGCAGTTCG GCTATGCCGA CAGCCACGGC ACGATCGAGG CCGGCAAGGT CGCCGACTTC
ATCGTCCTCG ATCGCAATCC GTTCAAGATC GCCGCTACCG ATCTTCACAA CGTCGTCGTC
ACGCAGAGCT ATGTCGGCGG CGAACTGATC TACGCGAAAT AG
 
Protein sequence
MVSGSAGIRK GIRRMMVAGP ILIASMASGT AQAADFILSG GEIYTPSGWV DAIAVQGDRI 
AAVGDGAALK KRYPAITTIV DLAGKTVMPG LHDMHVHPLG AGLSLQQCKF EQGSTPQQIL
DAVTACVKKA KPGAWIVGGQ WAASSFGDTP PNRQMLDAIA PNNPVSLTDI SGHSSWANSL
ALKAAGIARG TPDPKGGIIE RDASGEPNGL LRESAAHLVR QKIPAPSAED NVRALKTGID
MLVSYGVTAL VDAVVTPDGL SAYQTLTARN QLKAHVRGCL VYGRTWGDNS AFDRTIADRE
RYGSDRFKLD CVKVFEDGVP TESHTAALID PYAPDEHGEV KEPKRGLLLV QPAELDPLVT
RLDKMGVTVK FHAAGDQASR TALDAIAAAR KANGPDGPTH DVGHLTFIQP EDMKRAKAIR
ATLEFSPYLW FPSPINDDII KASGAERIKR VWPVREGLDS GALVVAGSDW SVIPSANPWI
GIETLVTRKA PDNQRPGEVY GPDEAITLKE AIDIFTINAA RQFGYADSHG TIEAGKVADF
IVLDRNPFKI AATDLHNVVV TQSYVGGELI YAK