| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_3201 |
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| Symbol | |
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| ID | 5198205 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingomonas wittichii RW1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009511 |
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| Strand | + |
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| Start bp | 3518084 |
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| End bp | 3519943 |
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| Gene Length | 1860 bp |
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| Protein Length | 619 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 640582747 |
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| Product | thiamine biosynthesis protein ThiC |
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| Protein accession | YP_001263686 |
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| Protein GI | 148556104 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0422] Thiamine biosynthesis protein ThiC |
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| TIGRFAM ID | [TIGR00190] thiamine biosynthesis protein ThiC |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.814938 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCGATA TTCCCGCGCG CACCGAGATG AAGGTGACGA CCGGTCCGAT CCGGGGATCG
CGCAAGATCC ATGTCGAGGG GCCTCAGGGC GTCCGCGTCG CGATGCGCGA GATCGCGCTC
GAGCCGTCGT CGGGCGAGCC GCCGGTCCGC GTCTATGACT GCTCCGGCCC CTATACCGAT
CCCAACGCCC ATATCGACAT CATGGCCGGC CTGCCCGCGC TGCGCCGCGA CTGGATTCTC
GGGCGCGGCG ACGTCGAGGA CTATGAGGGC CGCGCGATCA AGCCCGAGGA CAACGGCCTG
AAGGGGCCGG ACCGGTCGGG CGGCGTCACC CCCTTCCCGA ACGTGGTGCG GCGCCCGCTG
CGCGCGAAGG CAGGGCAGAA TGTCAGCCAG ATGCACTATG CCCGGCGCGG CATTATCACG
CCCGAGATGG AATATGTCGC GATCCGCGAG AATGTCGGCC GCGCCGCGCT CAAGGAGAAG
CTGCTGCGCG ACGGCGAGGA TTTCGGCGCG GCGATCCCCG ACTTCGTCAC CCCCGAATTC
GTCCGCGACG AGGTGGCGCG CGGCCGGGCG ATCATCCCCA GCAACATCAA CCATCCCGAA
TCGGAGCCGA TGGCGATCGG CCGCAACTTC CTGGTGAAGA TCAACGCCAA TATCGGCAAT
TCGGCGGTCG CTTCCGACGT CGCGGCCGAG GTCGACAAGA TGGTCTGGTC GATCCGCTGG
GGCGCCGACA CGGTGATGGA CCTGTCGACC GGCCGCAACA TCCACGACAC GCGCGAATGG
ATCCTGCGCA ACTCGCCGGT CCCGATCGGC ACGGTGCCGA TCTACCAGGC GCTGGAGAAG
GTCGGCGGCA TCGCCGAGGA CCTGACCTGG GAAATCTTCC GCGACACGCT GATCGAGCAG
GCCGAGCAGG GCGTCGACTA TTTCACCATC CATGCCGGCG TCCGCCTGCC CTTCATCCCA
ATGACGGCCA AGCGCGTCAC CGGCATCGTC AGCCGGGGCG GATCGATCAT GGCGAAATGG
TGCCTGGCGC ACCATCGCGA GAGCTTCCTC TACGAGCGGT TCGACGAGAT CTGCGAGATC
ATGAAGGCCT ATGACGTCGC CTTCTCGCTG GGCGACGGCC TGCGCCCCGG ATCGATCGCC
GACGCCAATG ACGAGGCGCA GTTCAGCGAA TTGAAGACGC TGGGCGAGCT GACCCAGATC
GCCTGGCAGC ACGACGTGCA GGTGATGATC GAGGGCCCCG GCCATGTGCC GATGCACAAG
ATCAAGGCGA ACATGGACAA GCAGCTCGAA GCCTGCGGCG AGGCGCCCTT CTACACGCTC
GGGCCGCTGA CCACCGATAT CGCGCCGGGC TATGATCACA TCACCTCGGC GATCGGCGCG
GCGATGATCG GCTGGTTCGG CACGGCGATG CTCTGCTACG TCACGCCGAA GGAGCATCTG
GGCCTGCCCG ACCGCGACGA CGTGAAGGTC GGCGTGGTCA CCTACAAGCT CGCCGCCCAC
GCCGCCGACC TGGCGAAGGG CCACCCGGCC GCCAAGCTGC GCGACGACGC GCTCAGCCGC
GCCCGCTTCG AGTTCCGCTG GCGCGACCAG TTCAACCTGT CGCTCGATCC CGACACGGCC
GAGCAGTATC ACGACCAGAC GCTGCCGGCC GAAGGCGCCA AGACCGCGCA TTTCTGCTCG
ATGTGCGGGC CGAAATTCTG CTCGATGAAG ATCACCCAGG AGGTCCGCGA CTTCGCCGCC
ACCAGGAACG CCCCTGCCGA CCAGTTCATC GCGGCCGGCG ACGCCGAGGC GGGCATGCGC
GCGATGAGCG ACGTGTTCCG CGAGAAGGGC GGGGAGATCT ATCTGCCGGC GGCGGAGTAG
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| Protein sequence | MADIPARTEM KVTTGPIRGS RKIHVEGPQG VRVAMREIAL EPSSGEPPVR VYDCSGPYTD
PNAHIDIMAG LPALRRDWIL GRGDVEDYEG RAIKPEDNGL KGPDRSGGVT PFPNVVRRPL
RAKAGQNVSQ MHYARRGIIT PEMEYVAIRE NVGRAALKEK LLRDGEDFGA AIPDFVTPEF
VRDEVARGRA IIPSNINHPE SEPMAIGRNF LVKINANIGN SAVASDVAAE VDKMVWSIRW
GADTVMDLST GRNIHDTREW ILRNSPVPIG TVPIYQALEK VGGIAEDLTW EIFRDTLIEQ
AEQGVDYFTI HAGVRLPFIP MTAKRVTGIV SRGGSIMAKW CLAHHRESFL YERFDEICEI
MKAYDVAFSL GDGLRPGSIA DANDEAQFSE LKTLGELTQI AWQHDVQVMI EGPGHVPMHK
IKANMDKQLE ACGEAPFYTL GPLTTDIAPG YDHITSAIGA AMIGWFGTAM LCYVTPKEHL
GLPDRDDVKV GVVTYKLAAH AADLAKGHPA AKLRDDALSR ARFEFRWRDQ FNLSLDPDTA
EQYHDQTLPA EGAKTAHFCS MCGPKFCSMK ITQEVRDFAA TRNAPADQFI AAGDAEAGMR
AMSDVFREKG GEIYLPAAE
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