| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_3080 |
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| Symbol | |
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| ID | 5197491 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingomonas wittichii RW1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009511 |
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| Strand | - |
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| Start bp | 3379582 |
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| End bp | 3381714 |
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| Gene Length | 2133 bp |
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| Protein Length | 710 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 640582629 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_001263568 |
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| Protein GI | 148555986 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | [TIGR01783] TonB-dependent siderophore receptor |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGATTA TCGCAAGCGC GCTACTGCTC GGCACCGCAC TTTCGGCTGG GAGCGTCCAG
GCACAGGCAA CCGCGGGAGC GGACGGTTCG GACGCCTATG GCGACATCCT CGTCACGGCC
AACAAGACGG GCGCGACCCG CCTGCAGGAC ACGCCCCTCG CGATCACCGC GTTCAGCGCC
CCGGCGCTGG AGGCGACCGG GATCAAGGAC GTGCGCGACC TGGCCTCGCT CACGCCGAAC
CTGCAGGTGA CGCAGAATGC GTCCTTCTCG CAGGTCTATA TCCGCGGCAT CGGCTCGAAC
AACGTGTTCG GCGGTTCGGA CCCATCGTCG ACGATCCATC TCGACGGCGT CTATCTGGCG
CGCCCCGCCA GCTATCTCTC CAACTTCCTC GACGTCGAGC GGATCGAGGT GCTGCGCGGG
CCGCAGGGCA CGCTCTACGG CCGCAACTCG GTGGGCGGCA CGATCAACGT CATCAGCCGC
AAGCCGACCG ACGAGTTCGC CGCCAAGGCC CAGCTGACCT ACGGCAACTA TAATTTCGCG
CGGGCCGAGG GCTATGTCAG CGGGCCGCTG GTCAAGGGCA AGGTCGACGG GTCGATCTCG
CTCATCGGCA GCCGCCGCGA CGGCTATCTG AAGAACGTCG TCCCGGGCAT CGGCGATGCG
GACAACGAAC GCACGTTCGG CGCGCGCGGC CAGCTCCGCT TCACCCCGTC GGAGCCGCTG
GAGATCATCC TGCGCGGCGA CTATCTCCAT TCGAACGACG CGCTCGCGGG CTATGTGAAG
CTGCTCCAGA CGACCGCCGA TCCGCTGGCC AACAGCGTGC TGGGCGATTA TCGCAAGGTC
GCGCTCAACA TCCGCCCGAA GGCCAACCGC AAGCAATCGG GCGCGGCGGC CGAGATCAAT
TACGACTTCG GCGACGCCGC CAAGCTCAAG TCGCTCACCG CCTACCGCGC CAACCGGCTC
GTCCAGGCCG GCGACACCGA CGGCACGGCG CTGAACATCC GCCGCACCGA CCAATATGAG
AAGCAGCATC AGTTCTCGGA GGAGCTGAAC CTGACGGGCA AGTTCGGCGG GCTGACCTAT
ATCCTCGGCG CCTATTATTT CGACGAGCAT ATCGACGTCG ATTCCACCGT CACCACCTTC
CCGACGGTGC GGGCGAACTT CTCGCCGACG ATCAACACCA AGGCGTGGGC GGGCTTCGCG
CAGGGCAATT ATGCGCTGAC CGACCAGCTC AGCCTGACCG CGGGCATCCG CTATACCCGC
GAACGGAAGC GCTTCGACCA GGTGGCGACC AATTTCGACT TCGCCACCGG GCTGCCGCTC
GCCACCTATC CGCGGACCTA TTCGACGGCG GGCACCTACA AGGCGTGGAC GCCGAAATTC
GGTATCGAGT TCCGGCCGAC CGACGGCGTG CTGCTGTTCG CGTCGGCGAC CCGGGGCTTC
AAGTCGGGCG GGTTCAACTT CGCCAGCGCC AACCCCGCGC AGGGCTTCGC GCCGGAGACG
CTGTGGAGCT ATGAAGCGGG CGCCAAGCTC GACCTGTTCG ACCGCAAGCT GCGCCTGAAC
GGCACCTATT TCCACTATGA CTACAAGGGC CTGCAGGTGC AGTCCTTCCT GACGCCGGGC
GTGATCGACA TCACCAACGC GTCCGACGCC ACGGTCGACG GCGTCGAGAT CGAGGCGGAG
GCGCATCCGA CCGACTGGCT GCAGCTCGGC GCGAACCTCG CTTATCTGGA TGCGGTCTAC
AAGAACTACA CCTCGGCGCT CAAACCGGGG AACATCGTGT TCGATGCGTC GGGCAACCGG
CTGAACCTGT CGCCCAGATG GTCGTACACC CTCTATGCTC AGGCCGACGT GCCGGTGGGC
GACGGCGCCT TCTTCGCGCG CGGCGAATAT AGCCACCGCA CCCGGCAATA TTTCACGGCG
ATCAACGGCG GCCTCGACCA GCAGGCCGGC TATGGGCTGA TCAACGCCAG CATCGGCTAC
ACGCTGCCGG GCGATCATAT CCAGTTCCTG CTGTTCGGCC GCAACCTCGC CGACAAGGAA
TATGTCACCA GCACGGCGAG CTTCGCGTCC GGCATCGTCG GCCGCGTCGG CGAACCGCGC
ACCTACGGCA TCCGGGCCGT GTTCAAATAT TGA
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| Protein sequence | MKIIASALLL GTALSAGSVQ AQATAGADGS DAYGDILVTA NKTGATRLQD TPLAITAFSA
PALEATGIKD VRDLASLTPN LQVTQNASFS QVYIRGIGSN NVFGGSDPSS TIHLDGVYLA
RPASYLSNFL DVERIEVLRG PQGTLYGRNS VGGTINVISR KPTDEFAAKA QLTYGNYNFA
RAEGYVSGPL VKGKVDGSIS LIGSRRDGYL KNVVPGIGDA DNERTFGARG QLRFTPSEPL
EIILRGDYLH SNDALAGYVK LLQTTADPLA NSVLGDYRKV ALNIRPKANR KQSGAAAEIN
YDFGDAAKLK SLTAYRANRL VQAGDTDGTA LNIRRTDQYE KQHQFSEELN LTGKFGGLTY
ILGAYYFDEH IDVDSTVTTF PTVRANFSPT INTKAWAGFA QGNYALTDQL SLTAGIRYTR
ERKRFDQVAT NFDFATGLPL ATYPRTYSTA GTYKAWTPKF GIEFRPTDGV LLFASATRGF
KSGGFNFASA NPAQGFAPET LWSYEAGAKL DLFDRKLRLN GTYFHYDYKG LQVQSFLTPG
VIDITNASDA TVDGVEIEAE AHPTDWLQLG ANLAYLDAVY KNYTSALKPG NIVFDASGNR
LNLSPRWSYT LYAQADVPVG DGAFFARGEY SHRTRQYFTA INGGLDQQAG YGLINASIGY
TLPGDHIQFL LFGRNLADKE YVTSTASFAS GIVGRVGEPR TYGIRAVFKY
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