| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_2830 |
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| Symbol | |
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| ID | 5199175 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingomonas wittichii RW1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009511 |
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| Strand | - |
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| Start bp | 3113248 |
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| End bp | 3114117 |
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| Gene Length | 870 bp |
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| Protein Length | 289 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 640582381 |
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| Product | shikimate dehydrogenase |
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| Protein accession | YP_001263321 |
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| Protein GI | 148555739 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0169] Shikimate 5-dehydrogenase |
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| TIGRFAM ID | [TIGR00507] shikimate 5-dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 31 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.0523448 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCGAAC TGCCTTTTGC GCCTGGTGCT TTCGCGGAAG TGATCGGCGA TCCGATCGGC
CATTCGAAGT CGCCGACGAT CCACAAATTC TGGCTCGACC GGGCCGGAAT CCCAGCGGAC
TATCGCGCGG CGCATGTGAA GCCCGAAGAC CTGTGGATCT ATTTCGAGGA ACGCCGCCGC
GATCCCGCCT GGCGCGGCTG CAACGTCACC ATTCCGCACA AGCAGGCGGT GATGAAGCTC
GTCGACCGGA TCGACCCCGC CGCCGAGCGG ATCGGCGCGG TCAACACGGT GATGCCGGAG
GACGGCAAGC TGGTCGGCTA CAACACCGAC TATGCCGGAT TCCTGGAGCC GATCCGGCCG
CTGCTCGCGC AGCAGCACCT GTTCCGCATG GCGCGGGTGT TCGGCACCGG CGGCGCGGCC
AAGGCGGTGG TGCTCGCGCT CCACGACCAT GGCTTCACCA TCGTCGTCGC CGCCCGCGAC
CTGGACAAGG CGCGGGCGCT GCGCGAGGCG TTCGAGCCCG ACGAGCGGCT GATCGCGCCG
ATCGAGATCT TCGCCGACCC GACCGATTTC CCGTTCGACG ACCGCGAGGG CATCCTCGAC
CTCGTCGTCA ATACCACCTC GCTCGGCATG AACGGGCAGC CGCCGCTCGC GCTCGACTTC
AGCCATGTCC CGCCCGATGC GGTGATCTAC GACATCGTCT ACGCCCCGCT CGAGACTCCG
CTGCTCGCCG AGGCGAAGCG CCACGGGCTG CGCACGATCG ACGGACTCCA CATGCTGATC
GGCCAGGCGG CGGCGGCGTT CGAGCGATTC TATGGCCGGC CCGCGCCGCG CGACGCCGAC
GATGCGTTGC GCGCGTTGCT GGTCGCCTGA
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| Protein sequence | MSELPFAPGA FAEVIGDPIG HSKSPTIHKF WLDRAGIPAD YRAAHVKPED LWIYFEERRR
DPAWRGCNVT IPHKQAVMKL VDRIDPAAER IGAVNTVMPE DGKLVGYNTD YAGFLEPIRP
LLAQQHLFRM ARVFGTGGAA KAVVLALHDH GFTIVVAARD LDKARALREA FEPDERLIAP
IEIFADPTDF PFDDREGILD LVVNTTSLGM NGQPPLALDF SHVPPDAVIY DIVYAPLETP
LLAEAKRHGL RTIDGLHMLI GQAAAAFERF YGRPAPRDAD DALRALLVA
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