Gene Swit_2710 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwit_2710 
Symbol 
ID5198870 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSphingomonas wittichii RW1 
KingdomBacteria 
Replicon accessionNC_009511 
Strand
Start bp2992805 
End bp2993911 
Gene Length1107 bp 
Protein Length368 aa 
Translation table11 
GC content72% 
IMG OID640582264 
Productribosomal large subunit pseudouridine synthase C 
Protein accessionYP_001263204 
Protein GI148555622 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0564] Pseudouridylate synthases, 23S RNA-specific 
TIGRFAM ID[TIGR00005] pseudouridine synthase, RluA family 


Plasmid Coverage information

Num covering plasmid clones40 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCGGCG CGGACGACAG CCGCCAGTTC ACCGTCGGCG AGGACGACCA CGGCATCCGG 
CTCGACCGCT GGTTCAAGCG GCACATGCCC GACACCAGCT TCAACATCGT CTCGCGCTGG
GCGCGCACCG GCCAGCTCCG GGTCGACGGC AAGCGCGCCG CCCCCGGCGA CCGGATCGAG
GCGGGCCAGG TCATCCGCCT GCCCCCGGCC GAGATCGCGG CGGCGGCGAC CGCCGCCAAG
GCGCAACGCC CCGCCCGGCC CCGCGCGCCG CTGACCGAGG AGGAGATCGC CTTCGCCCGC
AGCCTGGTGA TCCATCAGGA CCGGCAGGCG ATCGTGATCA ACAAGCCCCC CGGCCTCGCC
ACCCAGGGCG GCACCAAGAC CGACATCCAT GTCGACCGGC TGCTCGACGC GCTCCAGTTC
GACGCGGAGA GCCGGCCCAA GCTGGTCCAC CGCCTCGACA AGGACACGTC GGGGGTGCTG
CTGCTCGCGC GCACCTCGCG CGCCGCCGCG CATTTCGCCA AGGCGTTCAG CAGCCGCACC
GCGCGCAAGG TCTATTGGGC GATCGCGACC GGCGTGCCGT CGATCGACGA CGGCATGATC
GAGTTGCCGA TCGCCAAGCA GCCGGGCACC GGCGGCGAGA AGATGCACGT CGACGAGAAG
GAGGGCAGCC CGGCGCGGAC CCGCTACCGC GTGATCGAGC GCGCCGGCAA CCGCGCCTGC
TGGGTCGAGC TGCAGCCCCA TACCGGCCGC ACCCACCAAC TCCGCGTCCA CCTCGCCGCG
ATCGGCCACC CGATCGTCGG CGACGGCAAA TATGGCGGGG CCGAGGCGTT CCTGTCGGGC
ACGATCAGCC GCAAGATGCA CCTTCACGCC CGCCGCCTGC GGGTCGACCA TCCCGATGGC
GGCACGCTCG ACGTGATCGC CGAGCCACCC GAGCACATCA CCGATTCGCT GCGCAACCTG
GGCTTCGACG AGGCCGAGGG CGACCTGCCG ATCGACGAAG TGAAATTCTC CGAGACCGCC
GAGGGCAAGC GCCGCGCGCT GGCCGCCCGG GCGAAGGACG CGCGCAAGGC GCGGCGCGGC
GAACGGCGCG GACGCAGCCG GGGATGA
 
Protein sequence
MSGADDSRQF TVGEDDHGIR LDRWFKRHMP DTSFNIVSRW ARTGQLRVDG KRAAPGDRIE 
AGQVIRLPPA EIAAAATAAK AQRPARPRAP LTEEEIAFAR SLVIHQDRQA IVINKPPGLA
TQGGTKTDIH VDRLLDALQF DAESRPKLVH RLDKDTSGVL LLARTSRAAA HFAKAFSSRT
ARKVYWAIAT GVPSIDDGMI ELPIAKQPGT GGEKMHVDEK EGSPARTRYR VIERAGNRAC
WVELQPHTGR THQLRVHLAA IGHPIVGDGK YGGAEAFLSG TISRKMHLHA RRLRVDHPDG
GTLDVIAEPP EHITDSLRNL GFDEAEGDLP IDEVKFSETA EGKRRALAAR AKDARKARRG
ERRGRSRG