| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_2680 |
|---|
| Symbol | |
|---|
| ID | 5197711 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | + |
|---|
| Start bp | 2960019 |
|---|
| End bp | 2962994 |
|---|
| Gene Length | 2976 bp |
|---|
| Protein Length | 991 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 76% |
|---|
| IMG OID | 640582234 |
|---|
| Product | double-strand break repair protein AddB |
|---|
| Protein accession | YP_001263174 |
|---|
| Protein GI | 148555592 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG3893] Inactivated superfamily I helicase |
|---|
| TIGRFAM ID | [TIGR02786] double-strand break repair protein AddB, alphaproteobacterial type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCCGCC CCGCCGTCTT CACCATCCCC GCCCACCGCG CCTTCGCCGA CGCCCTCGCG
GCCGGGCTGA TCGCGCGCCA CGGCCCCGAT CCGCTGGGGC TCGCGCGGAC GGTGGTGCTG
GTGCCGAACA ACCGCGCCGC GCGCGCGATC AGCGACGCCT TCGTCCGCCG CGCCGAGGGC
GGGCTGCTGC TGCCCCGCCT CGTCGCGATC GGCGATCCCG AGCTCGACGA ACGGCTCGGC
GGGCTGCTCG ACCCGATCGA CGCCGATGCG GAGGAGGAGC CGATCCCGCC GGCGATCGAC
CCGCTCGAAC GGCAGATGAT CCTCGCCCGG CTGACCGCCG AGGCGCGCCA GGCGGCGGGC
GACCCGATCG ACGGCGGCGA GGCGATCCGG CTGGCGGGCG AGCTTGGCCG CACGCTCGAC
CAGATGCTGA TCGAGCAGAT CCCGGCGGCA CGACTGCGCG ACCTCGTCGC ACTGCCCGAA
CTGTCCGAGC ATTGGCAGCG ATCGCTGGCG ATGCTCGACA CGATCCTGAC GCGCTGGCCC
GCCGAGCTGG CGGCGCGCGG GCGGATCGAC TTGGCCGAGC GGCGCAACCG GCTGCTCGAC
CGGGTGGCGC GGCGCTGGCG CCACCGGCCG CCGCCGGGCG CGGTGATCGC GGCCGGCATC
AGCAGCACGA CCCCGGCGGT CGCCCGCCTG CTCGGCGTCG TCGCCCGACT GCCGGAGGGG
ATGGTCGTGC TGCCCGGCCT CGACACCGTC TCCGACGAGG CGGAGTGGCG GGCGCTCGGC
CCGCACGAGA CGGGCGAGGA CGGCGCCCGC CCGCCCCGTC CGGTCGAAAG CCATCCGCAA
TATGCGCTCA AGCGGCTGCT CGACCGGATG GACGTCGGCC GCGGCGAGGT CGCGACCTGG
CGCTGGGGCG GGGGCCGCGA CGCGCGCTCG GTGCGCGCCC GGGCGATCGC CAATGCGATG
GCGCCGGCCG CCTTCACCGA CAAGTGGCAC CGCCTGCCCC CGGCCGAGCG GCGGCTGAGC
GGCGTCCGCG CGATCGAGCT CGCCAATCCG GCCGAGGAGG CGCAGGTGAT CGCGCTGGCG
CTGCGCGAGG CGATCGAGAC GCCGGGCCGC ACCGCCGCGC TCGTCACCCC CGATCGCGTG
CTCGCGCGCC GCGTCACCGC GCATCTCGCC CGCTGGGGGA TCGTCGCCGA CGATTCGGCG
GGCACGCCGC TGTCGCTGAC CCCCGCCGGC ACGCTGCTGC TCGCCGTCGC CGAGGCCGCG
GCCGAGGGCT TCGCGCCGGT GCCGCTGCTC GCCCTGCTCA AGCATCCGCT GGTGCGGCGG
GGTGCTGCGC GCGGCGCCTG GCTCGATGGT GCGCGCAAGC TCGACATCGC GCTGCGCGGG
CCGCGCCCGC CCGCCGGGCT CGACGGCATC GCCCGCTATC TGCGCGACGG CGACGGCCAC
GCCAGACGCG CCCGCGCGCC CGCGATCGAC TGGTGGGACG AGGTCCGCCC GCTGCTGGAG
CCGCTGGAGA AAGCCTTCTC CGCCCGCACA TTGGCGGAAC TGCTCGCCGC CCTCCGCGAA
ACCATAAGCA CGCTCGCGGA CGATGCCGGC TGGTCGGGGC CGGACGGCCG CGCCGCCGCC
GACCTGGTCG CCGAGTTGGA GGCCTGGGCG CCGATCGGCC CGGCCGCCTT CGATCCGGCG
GGGCTCGCGC CGACGCTGCG GCTGCTGATG GACGCGGTCG CGGTCCGCCC GCCGCAGGGC
GGCCATCCGC GCCTGTCGAT CTGGGGCCTG CTCGAGGCGC GGCTCCAGCA TGCCGACCTG
ATGGTGCTGG GCGGGCTCAA CGAGGGGGTG TGGCCGGCGC TGCCCAGCCC CGATCCCTGG
CTGGCCCCGC GCATCCGCGC CGAGCTCGGC CTGCCCGGCC TCGAAACCCG CATCGGCCTG
TCGGCGCACG ACTTCGCGAT GGCGCTGGGC GCGCCCGAGC TGATCGTCAC CCGCGCCCGC
CGCGACGCCC GCGCGCCGAC CATCGCCTCG CGCTTCTGGC TGCGGCTGGA GGCGATGACC
GGCGGCATCA CCCGCGAGCA TCGCCTGCCC AACTGGGCCG CCGCGATCGA CCGGCCCGCC
GACCGCCGCT TCATCGCCCG CCCCGAGCCC GCGCCCCCCG TCGCCGACCG GCCGAACGTC
ATCGCCGTCA CCCGGCTCGA CCGGCTCCAG GCCGACCCCT TCGCCTTCTA CGCCGACGCG
ATGCTCAGGC TCCGCCCGCT CGACGCGGTC GACGCCGATC CGACCCCGGC CTGGCGCGGC
ACCGCCGTCC ATGCCGTGTT CGAGGCGTGG ATGAAGCAGG ACGATTGCGA CCCCGACCGG
CTGCTGCCGC GCGCCGAGGC GATGCTGCGC GATATGGCCG CGCACCCGGT GATGCAGGCG
CTGTGGGAGC CGCGGCTGAT CGAGGCGCTG CGCTGGGTCG CCGACCGGAT GCGCGAGGAA
CGGGCGCAGG GCCGCCGGCC GATCGCCGCC GAGCTGGACG GCCGGGTCGA GGTCGCCGGC
ATCACCCTGA CCGGCAAGGT CGACCGCATC GACCGGCTCG CCGACGGCAC GCTCGCGATC
GTCGACTACA AGACCGGCAA GCCGCCCAGC GCCGCGCAGG TCGAGGCGGG CTATGCGATG
CAGCTCGGCC TGCTCGGCCT GATCGCGGAC CGGGGCGGCT TCGACGGGAT CGAGGGGACG
CCGCTCGCCT TCGAATATTG GTCGCTGGCG AAGGATCGCG ACGCCTTCGG CCAGGTCCGC
TCGCCGGTCG GCGGCAAGAG CCATGTCGCG CCGCAGGACT TCGTCGCCCA TGCCGCCGCG
ATCCTGGCCA GCGCGGTCGA GCGCTGGCTG ACCGGGACCG AGCCCTTCAC CGCCAAGCTC
GCCCCCGAAT ATTCGCCCTA TGCCGATTAT GACCAGCTGA TGCGGCTCGA CGAATGGTAT
GGCCGGGGCG GCGGCGAGGC GGAGGGCGGG CGATGA
|
|---|
| Protein sequence | MSRPAVFTIP AHRAFADALA AGLIARHGPD PLGLARTVVL VPNNRAARAI SDAFVRRAEG
GLLLPRLVAI GDPELDERLG GLLDPIDADA EEEPIPPAID PLERQMILAR LTAEARQAAG
DPIDGGEAIR LAGELGRTLD QMLIEQIPAA RLRDLVALPE LSEHWQRSLA MLDTILTRWP
AELAARGRID LAERRNRLLD RVARRWRHRP PPGAVIAAGI SSTTPAVARL LGVVARLPEG
MVVLPGLDTV SDEAEWRALG PHETGEDGAR PPRPVESHPQ YALKRLLDRM DVGRGEVATW
RWGGGRDARS VRARAIANAM APAAFTDKWH RLPPAERRLS GVRAIELANP AEEAQVIALA
LREAIETPGR TAALVTPDRV LARRVTAHLA RWGIVADDSA GTPLSLTPAG TLLLAVAEAA
AEGFAPVPLL ALLKHPLVRR GAARGAWLDG ARKLDIALRG PRPPAGLDGI ARYLRDGDGH
ARRARAPAID WWDEVRPLLE PLEKAFSART LAELLAALRE TISTLADDAG WSGPDGRAAA
DLVAELEAWA PIGPAAFDPA GLAPTLRLLM DAVAVRPPQG GHPRLSIWGL LEARLQHADL
MVLGGLNEGV WPALPSPDPW LAPRIRAELG LPGLETRIGL SAHDFAMALG APELIVTRAR
RDARAPTIAS RFWLRLEAMT GGITREHRLP NWAAAIDRPA DRRFIARPEP APPVADRPNV
IAVTRLDRLQ ADPFAFYADA MLRLRPLDAV DADPTPAWRG TAVHAVFEAW MKQDDCDPDR
LLPRAEAMLR DMAAHPVMQA LWEPRLIEAL RWVADRMREE RAQGRRPIAA ELDGRVEVAG
ITLTGKVDRI DRLADGTLAI VDYKTGKPPS AAQVEAGYAM QLGLLGLIAD RGGFDGIEGT
PLAFEYWSLA KDRDAFGQVR SPVGGKSHVA PQDFVAHAAA ILASAVERWL TGTEPFTAKL
APEYSPYADY DQLMRLDEWY GRGGGEAEGG R
|
|---|
| |