| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_2643 |
|---|
| Symbol | |
|---|
| ID | 5200994 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | - |
|---|
| Start bp | 2924324 |
|---|
| End bp | 2925511 |
|---|
| Gene Length | 1188 bp |
|---|
| Protein Length | 395 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 640582199 |
|---|
| Product | polysaccharide biosynthesis protein CapD |
|---|
| Protein accession | YP_001263139 |
|---|
| Protein GI | 148555557 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1086] Predicted nucleoside-diphosphate sugar epimerases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 0.517596 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACATCC TCGATCTGGT CGGCCGCGAG AGCCCTTTGT TCGGCGCCGA CGTCGCGGCG
CACGAAGCGC AATTGTCGGA AACCGTCCGC GCGTCCCGCT TCCTCGTCAT CGGCGGCGCC
GGGTCGATCG GCCAGGCCGT CGCGCGCGAG ATCTTCAAGC GCGGCCCCAA GGCGCTCCAC
GTCGTCGACG TCAGCGAGAA CAACATGGTC GAGCTGGTCC GCGACATCCG CAGCACGCTC
GGCTATATCG ACGGCGATTT CAGCACCTTC GCGATCGACT GCGGCGGCCG CGAGTTCGAG
GCGCTGATGC AGGCGTCGGG CGGCTACGAC TTCGTCTTCA ACCTGAGCGC GCTCAAGCAT
GTCCGGTCGG AGAAGGACCC CTTCACGCTG ATGCGCCTGA TCGAGGTCAA CATCTTCAAC
ACGCTGAAGA CGCTCGGCCA GGCGCGCGAC GGCGGGGCGA AGCGCTATTT CTGCGTGTCG
ACCGACAAGG CGGCCAACCC GGTCAACATG ATGGGGGCCA GCAAGCGCAT CATGGAGATG
TTCCTGATGC GCGAGAGCGA GACGATGCCG GTGTCGACCG CACGCTTCGC CAATGTCGCC
TTCTCCGACG GCTCGCTGCT GCACGGCTTC AACCAGCGCT TCGCCAAGCG CCAGCCGATC
TCCGCGCCGA ACGACGTGCG CCGCTATTTC GTCACCCCGC AGGAATCGGG CGAGCTCTGC
CTGATGTCGG GCCTGCTCGG CGAGAATCGC GACATCTTCT TTCCGAAGCT CAGCGAGGAG
CTCCACCTCA CCACCTTCTC CGACATCGCG GTGCGCTATC TCGCGGCGCT CGGCTATGAG
GCGGTCGCGT GCGGATCGGA GGACGAGGCC CGCGCCCGCG TCGACGAGCT GATCCCGCAG
CGCCGCTGGC CCTGCTATTT CTTCGCCAGC GACACGACCG GCGAGAAGGA TTTCGAGGAG
TTCTTCACCG ACAGCGAGCT GCTCGACCTC GATCGCTTCG CCAATGTCGG CATCGTCAAG
AACCGGATGG ACTATGATCC GGCGCTGCTC GACCTGTTCA CGCGGGAGGT TGCGGCCTGC
CGCGCCCGCG ACGTCTGGGA GAAGGGGCCG ATCGTCGACC TGTTCAACCG CATGATCCCG
GAGTTCCATC ATCTCGACAC CGGCCGCTAT CTCGACGGCA GGATGTGA
|
|---|
| Protein sequence | MNILDLVGRE SPLFGADVAA HEAQLSETVR ASRFLVIGGA GSIGQAVARE IFKRGPKALH
VVDVSENNMV ELVRDIRSTL GYIDGDFSTF AIDCGGREFE ALMQASGGYD FVFNLSALKH
VRSEKDPFTL MRLIEVNIFN TLKTLGQARD GGAKRYFCVS TDKAANPVNM MGASKRIMEM
FLMRESETMP VSTARFANVA FSDGSLLHGF NQRFAKRQPI SAPNDVRRYF VTPQESGELC
LMSGLLGENR DIFFPKLSEE LHLTTFSDIA VRYLAALGYE AVACGSEDEA RARVDELIPQ
RRWPCYFFAS DTTGEKDFEE FFTDSELLDL DRFANVGIVK NRMDYDPALL DLFTREVAAC
RARDVWEKGP IVDLFNRMIP EFHHLDTGRY LDGRM
|
|---|
| |