| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_2591 |
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| Symbol | |
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| ID | 5196141 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingomonas wittichii RW1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009511 |
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| Strand | + |
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| Start bp | 2873034 |
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| End bp | 2875082 |
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| Gene Length | 2049 bp |
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| Protein Length | 682 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 640582147 |
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| Product | general secretion pathway protein D |
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| Protein accession | YP_001263087 |
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| Protein GI | 148555505 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1450] Type II secretory pathway, component PulD |
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| TIGRFAM ID | [TIGR02517] general secretion pathway protein D |
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Plasmid Coverage information |
| Num covering plasmid clones | 34 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGTCCCTGT TCGCCCGCAC AGCCCTCTCC GCCCTGGTCG CCGCCGCGAT GGCCGGCACG
CCGATCCTGG CGCAGGGCGC GTCCCAGGCC GCCGACGTGG TCGTCAACAT GCGCGCCGTC
GACATCGCCG ACGTCGCCGA GCAGATATCG CGCATCACCG GCCGCACCCT GATCCTCGAC
CCGGCGGTCA AGGGCACGGT CAACGTCACC TCGGCCGAGC CGCTATCGGT CGACGGGGTG
TGGGACCTGT TCCAGTCGGT GCTGCGCGTC CACGGCTTCG CGGCGGTCAA GTCGGGCCGG
TCCTGGCGGA TCATCCCGCA GGCCTCGGCG ATCCGCGACG CGGGATCGGG CGGGCGGCTG
TCGGGGCAGG ACGTCACCAC CCGCATGGTC CGGCTCCAGA ATGTCTCGGG CGAGCAGGCG
GCGCGCGTCT TCCGCCCGCT GGTCGCGCAG TTCGGCAGCA TCGAGGCGAT GGCCAGCCCC
AACGCGATCA TCGTCACCGA CTATGCCGAG AATGTCCGCC GCATCGAATC ATTGGCCCGC
GCGCTCGACA GCGGCGGCGG CGGCCGGTTC GACAGCATCA CCCTGCGCTA CGCCAACGCC
AAGGACGTCG CCGCCGCGAT CCAGGGGGTG ATGGGCGACG GCACCGCGAC CGGCGGCCCC
CGCGTCGTCG CCGACGAGCG CAGCAACATC GTCCTCGTCC GCGGCGAGCC GGCGATGGTG
TCCGAGGCCC GCCGCCTCGC CCACACCATC GACAAGCCCG GCGCGGGCGT GCCGATCACC
CGGATGATCC GCCTCAACAA TGGCGACGCC GAATCGGTGA CCGAGGTGCT GCAAGGCGTG
CTCGGCGAGC AGGGGACCGT CACCAACCCC GCCGCCCGCG CGGTCGCCGG CGGCCGGGCG
CGGATCACCC GCCAGCAATC CAACGCCGGC GCCCAGGCGG CCGGCCTGTC GCTCGGTTCC
ACCCCGGCGA CGCTCGGCGG CGGTCTGGCG GACGCGGCGT CGCCCGGCGC GGGCGGCAGC
GGCGGCGACG CGACGCCGAA AGGCTTCTCG ACCCCCGACC TCACCGTCCA GCCCGCGCCC
GAGCTCAACG CGATCGTGCT GCGCGGCACC CCGGCGGCGA TCGCCGAGGT CGAGCCGCTG
ATCGCCCAGC TCGACGTGCG CCGCCCGCAG GTGCTGATCG AGGCCGCGAT CGTCGAGATC
AGCGGCGACC AGGCCGAGCA GCTCGCCGTC CAGCTCGGCA TCGGCGCGGC GGCGATCAAC
CGCGCCAGCG GCGGCGCGAC CTCCTTCACC AGCCCCGGCC TGCCGCTCCA GTCGATCCTG
ACCGCGATCG GATCGCCGGC GGCGGGCGCG GTGCTGTCCA ATGGCGGATC GGCCAATATC
CGGTTCGGCG ACAATTTCAG CATCCTGCTC CAGGCGATCG GCCAGTCGAC CCGTTCCAAC
CTGCTGTCGA CGCCGAGCCT GACGACGCTC GACAATGAGC CGGCCGAGAT CGTCGTCGGC
CAGAACGTGC CCTTCCGCAC CGGCAGCTTC TCGACCGACG GCAACACGAT CAACCCGTTC
ACCACGATCG AGCGGCAGGA CGTCGGCCTG ACCCTCCGCG TCGTGCCGCG CATCCACCAG
GGCAATGTCG TCCGGCTGGA GGTCGCGCAG GAGGTGTCGT CGCTGACCAA TGCCGTGACC
GGCGCGGCCG ACCTGATCAC CAACCGCCGC AGCATCCAGA CCTCGGTGCT CGCCGACGAC
GGCCAGACGA TCGTGCTGGG CGGCCTGATC AGCGACGACC GCACCCAGAC GCGCAGCCAG
GTGCCGATCC TCGGCGACAT CCCGATCGCG GGCGAGCTGT TCCGATCGCG CAAGGAAAGC
CATGTGAAGC GGACGCTGTT CGTCTTCCTG AAGCCGACCA TCCTGCGCGA CCGCGAGGCC
GCCAACAGCG TCACCCAGGC CAAATATGCC CGCACCCGCT ATGACGAGGC GATGCTCGGC
AAGGGGCCGC CGCTCCTCCT CGAACCGCCG GGCCGACGCC TGCCGGTCGA GATTTCCGGG
GTCTATTGA
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| Protein sequence | MSLFARTALS ALVAAAMAGT PILAQGASQA ADVVVNMRAV DIADVAEQIS RITGRTLILD
PAVKGTVNVT SAEPLSVDGV WDLFQSVLRV HGFAAVKSGR SWRIIPQASA IRDAGSGGRL
SGQDVTTRMV RLQNVSGEQA ARVFRPLVAQ FGSIEAMASP NAIIVTDYAE NVRRIESLAR
ALDSGGGGRF DSITLRYANA KDVAAAIQGV MGDGTATGGP RVVADERSNI VLVRGEPAMV
SEARRLAHTI DKPGAGVPIT RMIRLNNGDA ESVTEVLQGV LGEQGTVTNP AARAVAGGRA
RITRQQSNAG AQAAGLSLGS TPATLGGGLA DAASPGAGGS GGDATPKGFS TPDLTVQPAP
ELNAIVLRGT PAAIAEVEPL IAQLDVRRPQ VLIEAAIVEI SGDQAEQLAV QLGIGAAAIN
RASGGATSFT SPGLPLQSIL TAIGSPAAGA VLSNGGSANI RFGDNFSILL QAIGQSTRSN
LLSTPSLTTL DNEPAEIVVG QNVPFRTGSF STDGNTINPF TTIERQDVGL TLRVVPRIHQ
GNVVRLEVAQ EVSSLTNAVT GAADLITNRR SIQTSVLADD GQTIVLGGLI SDDRTQTRSQ
VPILGDIPIA GELFRSRKES HVKRTLFVFL KPTILRDREA ANSVTQAKYA RTRYDEAMLG
KGPPLLLEPP GRRLPVEISG VY
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