| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_2583 |
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| Symbol | |
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| ID | 5196742 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingomonas wittichii RW1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009511 |
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| Strand | - |
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| Start bp | 2866447 |
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| End bp | 2867667 |
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| Gene Length | 1221 bp |
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| Protein Length | 406 aa |
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| Translation table | 11 |
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| GC content | 73% |
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| IMG OID | 640582139 |
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| Product | type II secretion system protein |
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| Protein accession | YP_001263079 |
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| Protein GI | 148555497 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1459] Type II secretory pathway, component PulF |
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| TIGRFAM ID | [TIGR02120] general secretion pathway protein F |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 0.711368 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCGGCCT TCGCCTATCG CGCGGTCGAC ATACGGGGCG CCGCGAAGCA GGGGGTGATC
GAGGCGTCGA GCCCCGCCGC CGCGCGCCAG CTGCTTCGCG ACCGCGAGCT GCTGCCGACC
GCGGTCGAGG CGGCGACGGC GGGCGGCGCG GCGCCCGGCA TCGGCGCGCG GCTGTTCCGC
CGCAGGGTCG GCGCCCGCGC GCTCGCCACC GTCACCCGCC AGATCGCGAC GCTGGTGACG
AGCGAGGTCA ATATCGAGCA GGCGCTCAAG CTCGTCGCCG AGCAGGCCGA GGGCGCGGCG
CTCCGCTCGC TGCTGCTCGA CGTGCGCGGC GCGATCCTCG ACGGCTACAG CTTCGCCGCC
GCGCTGCGCC TGCACCCGGC GACCTTTCCG GAATTCTACA CCGCCTCGGT CGCGGCGGGC
GAGCAGGCGG GGCGGCTGGC GCAGGTGCTC GCCCATCTCG CCGACTTCGT CGAGAACCGG
CAGCGCAACC AGCAGAAGAT CCAGCTCGCC CTGCTCTATC CGGCGCTGCT CGCGGTCGTC
TCGTTCGGGA TGATGGCGCT GCTGATGGTC TATGTCGTGC CCGACATCGT CCGCGTCTTC
ATCTCGCGCG GGGCGGAGCT GCCCTTCCTC ACCCGCGCGC TGATCGCGAT CTCGGGCGGC
TTGCAGAAAT ATGGGCTGGC GATGGCGATC GCGCTGCTCG GCGCGATCCT GATCGGCGGG
CGCTGGCTGC GCGTGCCGGC CAACCGGTTG CGCTTCGACC GGCGGATCGC CACGACCTGG
CCGGTCGCGC GGTTCAGTCG CCAGTACAAC GCCGCGCGCT TCGCGGCGAG CCTCGCCACC
CTCGTCCAGA GCGCGGTGCC GCTGGTCGAC GCCCTCAACG CCGCCGCCGC CGTCACCCCC
AACCGCTATG TCCGCGAGGC GGCGATCGGC GTCGCGACGC GGGTGCGCGA GGGGGCGAGC
CTGCAGGCGG CGATGGGCGA ATCGGGCATC TTCCCGCCGA TGCTGGTCGC GATCGTCGCC
AGCGGCGAGA ATGGCGGCCA GCTCGGCCCC GCCCTCGCCC GCGCCGCCGC CGAGCTGGAG
CGCGAGATGG AGGCGATGGC GGCGCTGCTC GTCTCGCTGG TCGAGCCGCT GGTGCTGCTG
ATGATGGGCG GGCTGGTGCT GCTGATGGTG CTGGCGATCC TGCTGCCGAT CATCAACCTC
AACAATATCG TGGGGATGTG A
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| Protein sequence | MPAFAYRAVD IRGAAKQGVI EASSPAAARQ LLRDRELLPT AVEAATAGGA APGIGARLFR
RRVGARALAT VTRQIATLVT SEVNIEQALK LVAEQAEGAA LRSLLLDVRG AILDGYSFAA
ALRLHPATFP EFYTASVAAG EQAGRLAQVL AHLADFVENR QRNQQKIQLA LLYPALLAVV
SFGMMALLMV YVVPDIVRVF ISRGAELPFL TRALIAISGG LQKYGLAMAI ALLGAILIGG
RWLRVPANRL RFDRRIATTW PVARFSRQYN AARFAASLAT LVQSAVPLVD ALNAAAAVTP
NRYVREAAIG VATRVREGAS LQAAMGESGI FPPMLVAIVA SGENGGQLGP ALARAAAELE
REMEAMAALL VSLVEPLVLL MMGGLVLLMV LAILLPIINL NNIVGM
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