| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_2354 |
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| Symbol | |
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| ID | 5199938 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingomonas wittichii RW1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009511 |
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| Strand | - |
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| Start bp | 2616981 |
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| End bp | 2618537 |
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| Gene Length | 1557 bp |
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| Protein Length | 518 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 640581900 |
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| Product | protease Do |
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| Protein accession | YP_001262851 |
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| Protein GI | 148555269 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0265] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain |
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| TIGRFAM ID | [TIGR02037] periplasmic serine protease, Do/DeqQ family |
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Plasmid Coverage information |
| Num covering plasmid clones | 30 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGCGTTATG CCTATGGGAT CACCGCGGCC TTGCTGGCGG GCGGTGCGGC CGCAACCCTG
ACCTTGCAGC AACCGGTCGG CGCCCAGGTG GCGCAGAACG CGCCGGGCTC GATCAACGCG
ACCGCACCCC GACCGGGCGC GCCGATGAGC TTCGCCGATC TCGCGGCCAA GCTGCAGCCG
GCGGTCGTCA ACATCTCCAC CACCCAGAAG ATCCAGGTGC GCGGCGGCGG CAACGCCTTC
TCCGGCACCC CGTTCGAGGA ACTGTTCCGG CGCTTCGGCG GCGGCCAGGG CGACGACGGC
AAGCCGATCA CGCGCGAGGC GACCTCGCTC GGCTCGGGCT TCATCATCTC GCCCGACGGC
TATGTCGTCA CCAACAACCA CGTCATCTCG GCCTCGCCCG AGGGCGGCAG CGGCGCGGTG
GTCAGCTCGA TCACCGTCAC CCTGCCCGAC CGCAAGGAAT ATAAGGCGAC GATCGTCGGC
CGCGACCAGA CGTCGGACCT GGCGCTGCTC AAGATCGACG CGAAGAACCT GCCCTTCGTC
CAGTTCGGCG ATTCGACCCG TACCCGGGTC GGCGACTGGG TGGTGGCGAT CGGCAATCCG
TTCGGCCTCG GTGGCACGGT GACGGCGGGC ATCGTCTCGG CGCTGCACCG CTCGATCGGC
ATCAACGGCC CCTATGACCG CTACATCCAG ACCGACGCCT CGATCAACCA GGGCAATTCG
GGCGGCCCGA TGTTCGATCT GCAGGGCAAC GTCATCGGCA TCAACACGGC GATCTTCTCG
CCGACCGGCG GCAATGTCGG CATCGGCTTC GCGATCCCGG CCGAGGAGGC CAAGCCGATC
ATCGACCAGC TCCGCACCGG CCAGCGGGTG CGGCGCGGCT ATCTGGGCGT CGGCATCCAG
CCGATGACCG AGGACATCGC CAGCAGCCTG GGCCTGCCCA AGGACCGCGG CGAGATCGTC
GCCCGGGTCG AGCCGGGCGA GGCGGCGGCG CGCGCGGGCA TCCGCCAGGG CGACGTCATC
GTCCGCGTCG ACAATCAGGA GATCACCCCC GACAACACGC TGTCCTACAT CGTCGGCAAG
GCCGCGGTGG GCGCGCGCCT GCCGATCGAG CTGATCCGCG AGGGCCAGCG CAAGACGGTG
ACGGTGACGC TGGGCGAACG CCCGCCCGAG GACCAGCTCG CCAGCGCCGG CAACCTCGAC
GAGGACCAGG GCGACGACGC CCCGGGCGCG GCGCAGAGCG CGCCCGACCA GTCGACCCGC
ACGGCGATCG GCCTCGGCCT GCAGACGCTG ACGCCCGACA TCGCCCGGCG CCTGGGCGTC
TCGTCGACGC TGCGCGGCGT GGTGATCAAC TATGTCGATC CGTCGAGCGA TGCCGCGGCC
AACGGCTTCC AGCCGCGCGA CATCATCCTG CAGATCAACA ATGTGCCGGT GGCGACGGTC
CAGGCGGCGG CGGCGAAGAT CACCGAGGCG CAGAAGGCCA AGCGCCCGAC TGTGCTCTTG
TTCGTCCAGC GCGGCAACAA TCCGCCGCGC TATGTGGGCG TGCAGATCCG CAACTGA
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| Protein sequence | MRYAYGITAA LLAGGAAATL TLQQPVGAQV AQNAPGSINA TAPRPGAPMS FADLAAKLQP
AVVNISTTQK IQVRGGGNAF SGTPFEELFR RFGGGQGDDG KPITREATSL GSGFIISPDG
YVVTNNHVIS ASPEGGSGAV VSSITVTLPD RKEYKATIVG RDQTSDLALL KIDAKNLPFV
QFGDSTRTRV GDWVVAIGNP FGLGGTVTAG IVSALHRSIG INGPYDRYIQ TDASINQGNS
GGPMFDLQGN VIGINTAIFS PTGGNVGIGF AIPAEEAKPI IDQLRTGQRV RRGYLGVGIQ
PMTEDIASSL GLPKDRGEIV ARVEPGEAAA RAGIRQGDVI VRVDNQEITP DNTLSYIVGK
AAVGARLPIE LIREGQRKTV TVTLGERPPE DQLASAGNLD EDQGDDAPGA AQSAPDQSTR
TAIGLGLQTL TPDIARRLGV SSTLRGVVIN YVDPSSDAAA NGFQPRDIIL QINNVPVATV
QAAAAKITEA QKAKRPTVLL FVQRGNNPPR YVGVQIRN
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