Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swit_2196 |
Symbol | |
ID | 5200918 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingomonas wittichii RW1 |
Kingdom | Bacteria |
Replicon accession | NC_009511 |
Strand | - |
Start bp | 2457232 |
End bp | 2460099 |
Gene Length | 2868 bp |
Protein Length | 955 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 640581741 |
Product | P4 family phage/plasmid primase |
Protein accession | YP_001262693 |
Protein GI | 148555111 |
COG category | [R] General function prediction only |
COG ID | [COG3378] Predicted ATPase |
TIGRFAM ID | [TIGR01613] phage/plasmid primase, P4 family, C-terminal domain |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 0.319674 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 5 |
Fosmid unclonability p-value | 0.00463191 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | GTGGCTGACA ATGTCGTGCC GATCGGCGAG GCGAAGAAGC CGCGCAAGCC TAGGGGCGGC GGGGAGCCGC CCAAGGGATC GGGCAATATC TTCCTCGACG CCGCGCTGGG CTATGCCGCG CGCGGGTGGC CCGTGTTTCC GTGCAACCCG AAGAACAAGC GGCCGCTGCT CGGCAAGGAT CGCGACGCCC AGGGCAATGC CATCCCCGGC ACGGGAGGGC TGAAGAAGGC CTCGACAGAT CCCGAGACGA TCAGGGGCTG GTGGCGGAAA TGGCCGAAGG CGATGATCGG CCTGCTGACG GGCGTGAACG GCCTGTTCGT CGTCGACTTC GATCCCGGTA TCGAGACCGA TCCGAAAACC GGCGAGCCCA TCATGGACCC GGTAACGGGG GAGCCGATCG AATATACGCT GGAAGGCCTG AAGGCCGTCC TGTGCTTCCA GATCGGCGGG CCGCTGCCGG CGTCGCTGGC GGTCCGCACC GCCGGCAAGG GCGGCGTCCA CGTCTATTTC CGCCAGCCCG ACGAAGGGGC GGACATCCGC AATCGGAACA ACCTTCCGCA CCGGATCGAC GTGCGCGGCA CCGGCGGCTA TGTCATCGCG CCGCCGTCCG TCATGGACAC CGGCCGGGAA TATCGCTGGC TTCATGGCGA CGCCGATGTC GAGCCGGTCG AGGCGCCCGC GGCCCTGGTC GACATCCTGC GGAAGCCGAA GGGTTCCGCC CCATCGGAAA ACGTCGGCGC GAATGCGCCG GCATCATCGC GCCCCACCGT CGCGGTGGAT CGGCCGACGA GCGAAGCCGA TGCCGAGGAG CAGGCGTTGC GCCGCTATGG CCTGGCCGCG CTCGATCGCG AGGTGGAGAA GGCCCGCACC GCGCCGAACG GGACGCGCAA CAACACGCTG AACGCCTGTG GGCTCGCGTT GGGCCATCTG GTCGGAGCCG GGGCCTTGTC GCGCGAGCTG GCGATCAGCG CCCTGGTCGA CGTGGCGCGG GCGTGGCGCG ACATCGACAA GTCGACCGAC ACGATCACCC GCGCGGTCGA CGATGGCGCC GCCGATCCGC GCGAGCTGGC GCACGTCCGC GCCGACGCCC GTGATCGCTT CCGCCGCTTC GCGGGGCGAA GGCGCGACAA CCCTTCCGCC GCTTCCGGTC TGCGCGCAGC GGAGATCGAG CAAAGCTTCC AATCTGGAAG TGAGGCGAAT GACGGCGACG CCGCCGGGGT GGAGACAGGG CGGCGGTCGA CCGCATCGCA GCGCGCGCGC GCGGCGCGGG AGCTGCACGG CAAGCTCGCC CGGTACAACC GGACGGACTT GGGCAATGCC GAGCGGTGGC GGGACCGGTT CGGCGACGAC TTCCGCTATT CGCCCGCGTT GGGCTGGTTC GCGTGGGACC GCAAACGCTG GAAGCTGCTG TCGGCCGAGG CCAACAAGGT GCCGGGCGAG GTGCTGGCGT CCGTGTTCAA GATGGTGCGC GCGATCCGGC GCGAAGCCTG GGTGGTCAGG GCGTCGGGTG TGCCCGACCT GGAGAAGAAC CCCGGCGGGC TGGATCGCAC CGTGTTCGAC GAGAAGGGCA AGGCGAAGCG GCTGTCGGCC GCGCTGTTCG CCTGGGCCGA CACCAGCGAA GGGAATGCTC GGTTGACCTG CGTCGCCAAG CTGGCGATGC CGTTCATCAC GATCGAGCCG GACGCCTTCG ATCGCGATCT CTATGCCTTC AACGTCCAGA ACGGGACGCT GCGCTTCCGG CGCGAGCGGC GGCCGGACGG ATCGTGGCGC GTCATGATGA AGCTGATGGA TCATGATCGA CGCGACCTGC TGACCAAGAT CAGCCCCGTG ACCTTCGATC CGGAGGCGAA GAGCCCGGTC TATGACGGGC TGCTCGAATG GGCGCAGCCC GATCCGGCGA TGCGGCGCTA TCTCCATCAG TGGGGTGGCC TGTCGCTGAC CGGCGAGACG GGCGAGCAGA AACTACACTT CTGGCATGGC GGCGGCGGCA ACGGCAAAGG CACGGTGCTG AACGCCTGGT GCCATGTCGC GGGCGACTAT TTCGCGTCGG TGTCGATCGA GACGTTCCTC GACCAGGGGC CGAAGAAATC GGGGGACAAG GCGACGCCCG ATCTCGCGAA GCTGCCCGGC GTTCGCCTGC TGCGGGTGTC GGAGCCGGAG GAGCGGGCGC AGCTGGCCGA GGCGCTGATC AAGCTGGTTA CCGGTCAAGA CCCCCTTTCG GTGCGGCACC TCCACAAGGG CTTCTTCGAG TTCCTGCCGC ACTTCAAGCT GACCATCATG GGCAACCATT GGCTCGGCAT CCGGGGCACG GATAAGGGCA TATGGCGGCG CGTGAAGCTG ATCCCATGGG ACGCCTCGAT CGATGATGCC GACAAGGACG AGACGCTCCC CGACCAGCTC AAGGCCGAAG CGAGCGGCAT CCTCAACCAT ATGATCAAGG GCCTGCTCGA CTGGATGCGC AACGGCCTGA TCGAGCCCCG ATCCGTGACG CAGGCGACGG CGGCCTATCG CGAGGCGAGC GATCCGCTCG GCCGGTTCCT GGCGCTGTGC GTCCGGCCGG CGCAGGGGAA GCGGGTGCAG TCCTCCCGGC TGCATGCCGT CTATGAAGCC TGGTGTGCGG CGGCGAGCGA ACCGACCTGG AAGAACAAGA CCTTCGCGCA GGCGCTGCTC GACAAGGGGT ACAAGAAGAA GCCCAGCAAC GGGATGCAAT GGCTCGATAT CGAGCTGATC CGCCAGCGCG AAGATTTCGT CGACGAGCAG GGCAACCCCA AGCCCTTCAC GATCGAGGAG GACGAGGACG ATCCGCCGCC GATCGAGCCC GACGATGGGG TGCAGTGGGG CGATGACGAC GATCTCCCGC CCCTCTGA
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Protein sequence | MADNVVPIGE AKKPRKPRGG GEPPKGSGNI FLDAALGYAA RGWPVFPCNP KNKRPLLGKD RDAQGNAIPG TGGLKKASTD PETIRGWWRK WPKAMIGLLT GVNGLFVVDF DPGIETDPKT GEPIMDPVTG EPIEYTLEGL KAVLCFQIGG PLPASLAVRT AGKGGVHVYF RQPDEGADIR NRNNLPHRID VRGTGGYVIA PPSVMDTGRE YRWLHGDADV EPVEAPAALV DILRKPKGSA PSENVGANAP ASSRPTVAVD RPTSEADAEE QALRRYGLAA LDREVEKART APNGTRNNTL NACGLALGHL VGAGALSREL AISALVDVAR AWRDIDKSTD TITRAVDDGA ADPRELAHVR ADARDRFRRF AGRRRDNPSA ASGLRAAEIE QSFQSGSEAN DGDAAGVETG RRSTASQRAR AARELHGKLA RYNRTDLGNA ERWRDRFGDD FRYSPALGWF AWDRKRWKLL SAEANKVPGE VLASVFKMVR AIRREAWVVR ASGVPDLEKN PGGLDRTVFD EKGKAKRLSA ALFAWADTSE GNARLTCVAK LAMPFITIEP DAFDRDLYAF NVQNGTLRFR RERRPDGSWR VMMKLMDHDR RDLLTKISPV TFDPEAKSPV YDGLLEWAQP DPAMRRYLHQ WGGLSLTGET GEQKLHFWHG GGGNGKGTVL NAWCHVAGDY FASVSIETFL DQGPKKSGDK ATPDLAKLPG VRLLRVSEPE ERAQLAEALI KLVTGQDPLS VRHLHKGFFE FLPHFKLTIM GNHWLGIRGT DKGIWRRVKL IPWDASIDDA DKDETLPDQL KAEASGILNH MIKGLLDWMR NGLIEPRSVT QATAAYREAS DPLGRFLALC VRPAQGKRVQ SSRLHAVYEA WCAAASEPTW KNKTFAQALL DKGYKKKPSN GMQWLDIELI RQREDFVDEQ GNPKPFTIEE DEDDPPPIEP DDGVQWGDDD DLPPL
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