Gene Swit_2196 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwit_2196 
Symbol 
ID5200918 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSphingomonas wittichii RW1 
KingdomBacteria 
Replicon accessionNC_009511 
Strand
Start bp2457232 
End bp2460099 
Gene Length2868 bp 
Protein Length955 aa 
Translation table11 
GC content68% 
IMG OID640581741 
ProductP4 family phage/plasmid primase 
Protein accessionYP_001262693 
Protein GI148555111 
COG category[R] General function prediction only 
COG ID[COG3378] Predicted ATPase 
TIGRFAM ID[TIGR01613] phage/plasmid primase, P4 family, C-terminal domain 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.319674 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00463191 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
GTGGCTGACA ATGTCGTGCC GATCGGCGAG GCGAAGAAGC CGCGCAAGCC TAGGGGCGGC 
GGGGAGCCGC CCAAGGGATC GGGCAATATC TTCCTCGACG CCGCGCTGGG CTATGCCGCG
CGCGGGTGGC CCGTGTTTCC GTGCAACCCG AAGAACAAGC GGCCGCTGCT CGGCAAGGAT
CGCGACGCCC AGGGCAATGC CATCCCCGGC ACGGGAGGGC TGAAGAAGGC CTCGACAGAT
CCCGAGACGA TCAGGGGCTG GTGGCGGAAA TGGCCGAAGG CGATGATCGG CCTGCTGACG
GGCGTGAACG GCCTGTTCGT CGTCGACTTC GATCCCGGTA TCGAGACCGA TCCGAAAACC
GGCGAGCCCA TCATGGACCC GGTAACGGGG GAGCCGATCG AATATACGCT GGAAGGCCTG
AAGGCCGTCC TGTGCTTCCA GATCGGCGGG CCGCTGCCGG CGTCGCTGGC GGTCCGCACC
GCCGGCAAGG GCGGCGTCCA CGTCTATTTC CGCCAGCCCG ACGAAGGGGC GGACATCCGC
AATCGGAACA ACCTTCCGCA CCGGATCGAC GTGCGCGGCA CCGGCGGCTA TGTCATCGCG
CCGCCGTCCG TCATGGACAC CGGCCGGGAA TATCGCTGGC TTCATGGCGA CGCCGATGTC
GAGCCGGTCG AGGCGCCCGC GGCCCTGGTC GACATCCTGC GGAAGCCGAA GGGTTCCGCC
CCATCGGAAA ACGTCGGCGC GAATGCGCCG GCATCATCGC GCCCCACCGT CGCGGTGGAT
CGGCCGACGA GCGAAGCCGA TGCCGAGGAG CAGGCGTTGC GCCGCTATGG CCTGGCCGCG
CTCGATCGCG AGGTGGAGAA GGCCCGCACC GCGCCGAACG GGACGCGCAA CAACACGCTG
AACGCCTGTG GGCTCGCGTT GGGCCATCTG GTCGGAGCCG GGGCCTTGTC GCGCGAGCTG
GCGATCAGCG CCCTGGTCGA CGTGGCGCGG GCGTGGCGCG ACATCGACAA GTCGACCGAC
ACGATCACCC GCGCGGTCGA CGATGGCGCC GCCGATCCGC GCGAGCTGGC GCACGTCCGC
GCCGACGCCC GTGATCGCTT CCGCCGCTTC GCGGGGCGAA GGCGCGACAA CCCTTCCGCC
GCTTCCGGTC TGCGCGCAGC GGAGATCGAG CAAAGCTTCC AATCTGGAAG TGAGGCGAAT
GACGGCGACG CCGCCGGGGT GGAGACAGGG CGGCGGTCGA CCGCATCGCA GCGCGCGCGC
GCGGCGCGGG AGCTGCACGG CAAGCTCGCC CGGTACAACC GGACGGACTT GGGCAATGCC
GAGCGGTGGC GGGACCGGTT CGGCGACGAC TTCCGCTATT CGCCCGCGTT GGGCTGGTTC
GCGTGGGACC GCAAACGCTG GAAGCTGCTG TCGGCCGAGG CCAACAAGGT GCCGGGCGAG
GTGCTGGCGT CCGTGTTCAA GATGGTGCGC GCGATCCGGC GCGAAGCCTG GGTGGTCAGG
GCGTCGGGTG TGCCCGACCT GGAGAAGAAC CCCGGCGGGC TGGATCGCAC CGTGTTCGAC
GAGAAGGGCA AGGCGAAGCG GCTGTCGGCC GCGCTGTTCG CCTGGGCCGA CACCAGCGAA
GGGAATGCTC GGTTGACCTG CGTCGCCAAG CTGGCGATGC CGTTCATCAC GATCGAGCCG
GACGCCTTCG ATCGCGATCT CTATGCCTTC AACGTCCAGA ACGGGACGCT GCGCTTCCGG
CGCGAGCGGC GGCCGGACGG ATCGTGGCGC GTCATGATGA AGCTGATGGA TCATGATCGA
CGCGACCTGC TGACCAAGAT CAGCCCCGTG ACCTTCGATC CGGAGGCGAA GAGCCCGGTC
TATGACGGGC TGCTCGAATG GGCGCAGCCC GATCCGGCGA TGCGGCGCTA TCTCCATCAG
TGGGGTGGCC TGTCGCTGAC CGGCGAGACG GGCGAGCAGA AACTACACTT CTGGCATGGC
GGCGGCGGCA ACGGCAAAGG CACGGTGCTG AACGCCTGGT GCCATGTCGC GGGCGACTAT
TTCGCGTCGG TGTCGATCGA GACGTTCCTC GACCAGGGGC CGAAGAAATC GGGGGACAAG
GCGACGCCCG ATCTCGCGAA GCTGCCCGGC GTTCGCCTGC TGCGGGTGTC GGAGCCGGAG
GAGCGGGCGC AGCTGGCCGA GGCGCTGATC AAGCTGGTTA CCGGTCAAGA CCCCCTTTCG
GTGCGGCACC TCCACAAGGG CTTCTTCGAG TTCCTGCCGC ACTTCAAGCT GACCATCATG
GGCAACCATT GGCTCGGCAT CCGGGGCACG GATAAGGGCA TATGGCGGCG CGTGAAGCTG
ATCCCATGGG ACGCCTCGAT CGATGATGCC GACAAGGACG AGACGCTCCC CGACCAGCTC
AAGGCCGAAG CGAGCGGCAT CCTCAACCAT ATGATCAAGG GCCTGCTCGA CTGGATGCGC
AACGGCCTGA TCGAGCCCCG ATCCGTGACG CAGGCGACGG CGGCCTATCG CGAGGCGAGC
GATCCGCTCG GCCGGTTCCT GGCGCTGTGC GTCCGGCCGG CGCAGGGGAA GCGGGTGCAG
TCCTCCCGGC TGCATGCCGT CTATGAAGCC TGGTGTGCGG CGGCGAGCGA ACCGACCTGG
AAGAACAAGA CCTTCGCGCA GGCGCTGCTC GACAAGGGGT ACAAGAAGAA GCCCAGCAAC
GGGATGCAAT GGCTCGATAT CGAGCTGATC CGCCAGCGCG AAGATTTCGT CGACGAGCAG
GGCAACCCCA AGCCCTTCAC GATCGAGGAG GACGAGGACG ATCCGCCGCC GATCGAGCCC
GACGATGGGG TGCAGTGGGG CGATGACGAC GATCTCCCGC CCCTCTGA
 
Protein sequence
MADNVVPIGE AKKPRKPRGG GEPPKGSGNI FLDAALGYAA RGWPVFPCNP KNKRPLLGKD 
RDAQGNAIPG TGGLKKASTD PETIRGWWRK WPKAMIGLLT GVNGLFVVDF DPGIETDPKT
GEPIMDPVTG EPIEYTLEGL KAVLCFQIGG PLPASLAVRT AGKGGVHVYF RQPDEGADIR
NRNNLPHRID VRGTGGYVIA PPSVMDTGRE YRWLHGDADV EPVEAPAALV DILRKPKGSA
PSENVGANAP ASSRPTVAVD RPTSEADAEE QALRRYGLAA LDREVEKART APNGTRNNTL
NACGLALGHL VGAGALSREL AISALVDVAR AWRDIDKSTD TITRAVDDGA ADPRELAHVR
ADARDRFRRF AGRRRDNPSA ASGLRAAEIE QSFQSGSEAN DGDAAGVETG RRSTASQRAR
AARELHGKLA RYNRTDLGNA ERWRDRFGDD FRYSPALGWF AWDRKRWKLL SAEANKVPGE
VLASVFKMVR AIRREAWVVR ASGVPDLEKN PGGLDRTVFD EKGKAKRLSA ALFAWADTSE
GNARLTCVAK LAMPFITIEP DAFDRDLYAF NVQNGTLRFR RERRPDGSWR VMMKLMDHDR
RDLLTKISPV TFDPEAKSPV YDGLLEWAQP DPAMRRYLHQ WGGLSLTGET GEQKLHFWHG
GGGNGKGTVL NAWCHVAGDY FASVSIETFL DQGPKKSGDK ATPDLAKLPG VRLLRVSEPE
ERAQLAEALI KLVTGQDPLS VRHLHKGFFE FLPHFKLTIM GNHWLGIRGT DKGIWRRVKL
IPWDASIDDA DKDETLPDQL KAEASGILNH MIKGLLDWMR NGLIEPRSVT QATAAYREAS
DPLGRFLALC VRPAQGKRVQ SSRLHAVYEA WCAAASEPTW KNKTFAQALL DKGYKKKPSN
GMQWLDIELI RQREDFVDEQ GNPKPFTIEE DEDDPPPIEP DDGVQWGDDD DLPPL