Gene Swit_2149 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwit_2149 
Symbol 
ID5199622 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSphingomonas wittichii RW1 
KingdomBacteria 
Replicon accessionNC_009511 
Strand
Start bp2409374 
End bp2410582 
Gene Length1209 bp 
Protein Length402 aa 
Translation table11 
GC content68% 
IMG OID640581694 
Producthypothetical protein 
Protein accessionYP_001262646 
Protein GI148555064 
COG category[V] Defense mechanisms 
COG ID[COG0577] ABC-type antimicrobial peptide transport system, permease component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value0.0531927 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTGGGGCA CCACCTTCCT GCTCGCGGTG CGCGAGATAA GGCGGCATCT GTTGCGCTCC 
TTCCTGACCA TCCTCGGCAT CGTCATCGGC GTCTGGGCGG TGGTGACGAT GGTGACGCTG
GGCCAGGGCG CGACCGCTGC GGTCAAGCAG CAGATCTCCA GCCTCGGCGC CAACGTCCTC
CAGGTCCGGC CCGGCCAGGG CTTCGGGCGC GGCGGCGGCG GGCCGCAGCC GCCCGACTTC
AAGATCGAGG ACCTCGACGC GATCCGCACC CAGATCGTCG GGGTGCAGGC GGTGGCGCCG
CTGGTCCAGT CGACCGGCAC CGCCGTCTAC AACGCGGCCA ACTGGTCGAC GACGGTCAAC
GGCACCAACC GCGAATATTT CACCGCCCAG CCCTGGACCT TCACCGGCGG GCGGATCTTC
TCGCCGGCGG AGGAGCAGGC GGGCAAGGCG GTGTGCATCG TCGGCAACAC CGTCCGCAAC
CGGCTGTTCC GCGGCATCGA CCCGGTCGGC CAGCGCTTCC GCATCAAGAA CATCTCGTGC
GAGATCATCG GCACGCTGGC GCCCAAGGGG CAGGGCGGCT TCGGCAACGA CCAGGACGAC
ATCGTGCTGA TGCCCTACAA GGCGGTGCAG CGGCGGATGA CCGGCAATCG CGACGTCCGC
ATGATGATGA TCTCGGTCGA CGCCGACTAT GACAGCCAGC GGGTGCAGGC GTCGCTGCGC
GACCTGCTGC GCGAGCGCCG CCACCTGAGC GACGGGGCCG AGGACGACTT CAACATCTTC
GACACCAAGC AGATATCCGA CACGCTGTCG GGCACCACCC AGATCCTCAC CTCGCTGCTC
GGCGCAGTGG CGGCGGTCAG CCTGCTGGTC GGCGGCATCG GCATCATGAA CATCATGCTC
GTCTCGGTGA CCGAGCGGAC CCGCGAGATC GGCATCCGCC TCGCCATCGG CGCCGTCGCG
CGCGAGGTGC TGCTGCAATT CCTGGTCGAG GCGGTGACGC TCGCCTGCCT GGGCGGGCTG
CTCGGCCTGT TCCTGGCGCT GGTCTCGACC CTGATCCTCG CGCCGGTGCT GAAGGTGCCG
TTCATCTTCG ATCCGCAGAT CAACCTCGTC GCCTTCATCT TCTCGGCGCT GATCGGGGTG
GTGTTCGGCT ATTTCCCGGC GCGGCGCGCG GCGTCGCTCA ACCCGATCGA GGCGCTGCGG
CACGAATGA
 
Protein sequence
MWGTTFLLAV REIRRHLLRS FLTILGIVIG VWAVVTMVTL GQGATAAVKQ QISSLGANVL 
QVRPGQGFGR GGGGPQPPDF KIEDLDAIRT QIVGVQAVAP LVQSTGTAVY NAANWSTTVN
GTNREYFTAQ PWTFTGGRIF SPAEEQAGKA VCIVGNTVRN RLFRGIDPVG QRFRIKNISC
EIIGTLAPKG QGGFGNDQDD IVLMPYKAVQ RRMTGNRDVR MMMISVDADY DSQRVQASLR
DLLRERRHLS DGAEDDFNIF DTKQISDTLS GTTQILTSLL GAVAAVSLLV GGIGIMNIML
VSVTERTREI GIRLAIGAVA REVLLQFLVE AVTLACLGGL LGLFLALVST LILAPVLKVP
FIFDPQINLV AFIFSALIGV VFGYFPARRA ASLNPIEALR HE