| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_2144 |
|---|
| Symbol | |
|---|
| ID | 5197993 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | - |
|---|
| Start bp | 2403854 |
|---|
| End bp | 2404879 |
|---|
| Gene Length | 1026 bp |
|---|
| Protein Length | 341 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 640581689 |
|---|
| Product | branched-chain alpha-keto acid dehydrogenase E1 component |
|---|
| Protein accession | YP_001262641 |
|---|
| Protein GI | 148555059 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0022] Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.869205 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCGAAG CCCCCCGCAC GATGAACATG ATCCAGGCGA TCAACTCGGC GATCGACGTC
GCGATGGGCC GCGACGACAG GATCGTCGTG CTGGGCGAGG ACGTCGGCTA TTTCGGCGGC
GTCTTCAAGG CGACCGAGGG GCTGCAGAAG CGCTACGGCA AGACCCGCGT GTTCGACACG
CCGATCAGCG AATGCGGCAT CATCGGCGTC GCGGTCGGCA TGGCGACCTA CGGCCTGCGC
CCGGTGCCCG AGATCCAGTT CGCCGACTAT ATCTATCCGG CGCTCGACCA GCTCGTGTCG
GAAGCGGCGC GGCTGCGCTA CCGCTCGGCC GGCGAATATA CCGCGCCGAT CACGGTGCGC
ACCCCGTTCG GCGGCGGCAT CTTCGGCGGG CAGACGCACA GCCAGAGTCC CGAGGGCATC
TTCACCCATG TCGCCGGGCT CAAGACGGTG ATCCCGTCCA ACCCCTATGA CGCCAAGGGC
CTGCTGATCG CCGCGATCGA GGACAATGAT CCGGTGATCT TCTTCGAGCC GAAGCGCATC
TACAATGGCC CGTTCGACGG CCATTACGAC CGCCCGGTCC AGCCGTGGAG CAAGTTCGCC
GAGAGCGCGG TGCCGGAGGG CTACTACACG GTCCAGCTCG GCAAGGCGCG GGTGGTGCGC
GAGGGCAACG ACGTCACCGT CCTCGCCTAT GGCACGATGG TCCATGTCGC GCACAGCGTG
ATCGAGGAGA CCGGCATCGA CGCCGAGCTG ATCGACCTGC GCACGCTGGT CCCGCTCGAT
ATCGAGACGG TGGTCGAGTC GGTCAGGAAG ACCGGGCGCT GCATGGTCGT CCACGAGGCG
ACCAAGACCA GCGGCTTCGG CGCCGAGCTG TCGGCGCTGG TGCAGGAGCA TTGCTTCCAC
TGGCTGGAGG CGCCGGTCCA GCGCGTGACC GGATGGGACA CGCCATATCC CCACAGCCTC
GAATGGGCCT ATTTCCCCGG CCCGGTGCGG CTGACCGAAG CGTTCAAGCG CGTGATGCAG
GATTGA
|
|---|
| Protein sequence | MTEAPRTMNM IQAINSAIDV AMGRDDRIVV LGEDVGYFGG VFKATEGLQK RYGKTRVFDT
PISECGIIGV AVGMATYGLR PVPEIQFADY IYPALDQLVS EAARLRYRSA GEYTAPITVR
TPFGGGIFGG QTHSQSPEGI FTHVAGLKTV IPSNPYDAKG LLIAAIEDND PVIFFEPKRI
YNGPFDGHYD RPVQPWSKFA ESAVPEGYYT VQLGKARVVR EGNDVTVLAY GTMVHVAHSV
IEETGIDAEL IDLRTLVPLD IETVVESVRK TGRCMVVHEA TKTSGFGAEL SALVQEHCFH
WLEAPVQRVT GWDTPYPHSL EWAYFPGPVR LTEAFKRVMQ D
|
|---|
| |