| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_2136 |
|---|
| Symbol | |
|---|
| ID | 5196672 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | - |
|---|
| Start bp | 2396017 |
|---|
| End bp | 2396715 |
|---|
| Gene Length | 699 bp |
|---|
| Protein Length | 232 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 640581681 |
|---|
| Product | Tol-Pal system, TolQ |
|---|
| Protein accession | YP_001262633 |
|---|
| Protein GI | 148555051 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0811] Biopolymer transport proteins |
|---|
| TIGRFAM ID | [TIGR02796] TolQ protein
[TIGR02797] tonB-system energizer ExbB |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 37 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATGCAGG ATCTGGCGGT CTCCGCATCG ACATCGGCGC TGTCGCCGAT CGCGCTGTTC
CTGCAGGCGG ACATCGTCGT GAAGGCGGTG ATGATCGGCC TGCTGCTGGC CAGCGTCTGG
ACCTGGACGA TCATCGTCTC GGGCAGCATG GCGCTCACCC GCGCCTTTCG GGCGAGCAAG
GGTTTCGAGA CCGATTTCTG GAAGTCCGAG GACATCGACA AATTCTACGA GGGCCCCGGC
CGGCAGGACA TTCCCGCCGC CAAGGTGTTC TCGGCCGGCG TCGCCGAATG GCGCCGCTCG
GTGCGCAACG GCCAGCCGGT CGATCGCGAC GGCACCCGCG CGCGCCTCTC CAACGCGATG
GCGGCGGCGG CGGGGGCGGA GATCGATCGC CTGTCCGACC GGCTCAACAT CCTCGCCACG
GTCGGCTCGG TCGCGCCCTT CGTCGGCCTG TTCGGCACGG TGTGGGGCAT CATGCGCAGC
TTCACCGACA TCGCCGCGTC GCAGAACACC TCGCTCGGCG TCGTCGCCCC CGGCATCGCC
GAGGCGCTGT TCGCCACTGC GCTCGGCCTG TTCGCCGCGA TCCCGGCGGT GATCGCCTAT
AACCGGCTGC TCCACCGCGT CTCGAAGATC GAAGGGCAGC TCCACCGCTT CGGCGACGCG
ATCCACATGA CGCTCAGCCG CGAGCTGGAG CGCGCCTGA
|
|---|
| Protein sequence | MMQDLAVSAS TSALSPIALF LQADIVVKAV MIGLLLASVW TWTIIVSGSM ALTRAFRASK
GFETDFWKSE DIDKFYEGPG RQDIPAAKVF SAGVAEWRRS VRNGQPVDRD GTRARLSNAM
AAAAGAEIDR LSDRLNILAT VGSVAPFVGL FGTVWGIMRS FTDIAASQNT SLGVVAPGIA
EALFATALGL FAAIPAVIAY NRLLHRVSKI EGQLHRFGDA IHMTLSRELE RA
|
|---|
| |