Gene Swit_2038 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwit_2038 
Symbol 
ID5197428 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSphingomonas wittichii RW1 
KingdomBacteria 
Replicon accessionNC_009511 
Strand
Start bp2286901 
End bp2287575 
Gene Length675 bp 
Protein Length224 aa 
Translation table11 
GC content63% 
IMG OID640581582 
Productisochorismatase hydrolase 
Protein accessionYP_001262535 
Protein GI148554953 
COG category[Q] Secondary metabolites biosynthesis, transport and catabolism 
COG ID[COG1335] Amidases related to nicotinamidase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones31 
Plasmid unclonability p-value0.608826 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCATGACG TTCAAATTCG CCAGGAGATT GTCGATCGGG TGATGGCGCG CAGGGGCAAG 
CTGCACTGGT TCGAGCAATT CGACCCAGCC CGCACCGCGC TGATCGTGAT CGACATGCAG
AACACCTTCT GCGAACCCGG CAGCCCGGCG GAAGTGGCGG TCTCGCGCTC CATCGTTCCC
AATATCAATC GACTGGCCGG CGAGCTGCGC GGGCGCGGCG GGCGGGTCGT CTGGGTATTG
CACGCCAATT CGCATTGGGG TGATCGCACC GACTGGGAGC TGTTCTTCAA CAATGTCGTT
TCGGACGACG TGAAGCTGCG CACGGCCGCC AGCCTCGCGC CCGGCAAGCA GCAGGTCTGG
TCGGGGCTGG CGACGGCGCC GGACGACATC ACGATCATCA AGAACCGCTA CAGCGCGCTG
ATCCAGGGTT CCTCGTCGTT GGAGCGCGTG CTGCGCAACC TTGGCATCGA CACCGTGCTG
ATCGCCGGCA CGAAGACCAA TGTCTGCTGC GAAGCGACCG GGCGCGACGC GATGATGCTC
GATTTCCGGA CCGTCATCGT CTCCGATTGC TGTGCGGCGC TGTCCGATGA CGAACATCGC
GCCACGCTCG AAACCTTCAT CCAGCAATTT GGCGATGTTC TCTCATCGGA TGAGGTGGTG
CGGCGGATGC GTTAA
 
Protein sequence
MHDVQIRQEI VDRVMARRGK LHWFEQFDPA RTALIVIDMQ NTFCEPGSPA EVAVSRSIVP 
NINRLAGELR GRGGRVVWVL HANSHWGDRT DWELFFNNVV SDDVKLRTAA SLAPGKQQVW
SGLATAPDDI TIIKNRYSAL IQGSSSLERV LRNLGIDTVL IAGTKTNVCC EATGRDAMML
DFRTVIVSDC CAALSDDEHR ATLETFIQQF GDVLSSDEVV RRMR