| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_2026 |
|---|
| Symbol | |
|---|
| ID | 5200938 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | + |
|---|
| Start bp | 2273148 |
|---|
| End bp | 2273804 |
|---|
| Gene Length | 657 bp |
|---|
| Protein Length | 218 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 640581570 |
|---|
| Product | isochorismatase hydrolase |
|---|
| Protein accession | YP_001262523 |
|---|
| Protein GI | 148554941 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG1335] Amidases related to nicotinamidase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 33 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCGATG AAAGCGTCCC CACCCCCGCC TGGGCGCAGG CGCGCGCCCT GTTCCATTTC
CCGAGGATCG ATCTCGCCCG GACGGCGCTG CTGGTGATCG ACCTGCAGAC GGGCTTCTTC
GATCCCCCGA CAGCCGCCGA CGCGATCATT CCGCGCGTCA ACCGACTGGC CGGGGAGCTG
CGCGCGGCCG GCGGCACGAT CGCCTTCCTG CGCCATAGCG GCTCCGACGA TCCGGCGCTT
TCGGTGCCGG CATGGCAGAA GGAGATTCCG ACGCTCGCCG CGCTGGACCG CCGGATGCGG
CCGGGCCTGG AGACCCATCA ACTCGACCGC CGGCTCGACG TCCGGGCCGA CGACCTGATC
GTCGACAAAT ATCGCTACAG CGCCTTCATC GCCGGCTCTT CCCGGCTGGA CGAGCTGTTG
CGCGCCCGGG GGATCGACAC GGTGATCGTC ACCGGCGCCT TCACCAATTT CTGCTGCGAA
TCCACGGCGC GGGACGGGCT GATGCTGGGC TATCGGGTGG TGTTCGTGGC CGACGCCACG
CTGGCCCGCA CGCAGGAGGA ACATGTGATG GCGCTGACCG CGCTCCAGCT CGCCTTCGCC
GATGTCAGAA CGACGGCCGC GACGGCGGCG CTGATCGCCG ACAGCCTAAC GCCCTGA
|
|---|
| Protein sequence | MADESVPTPA WAQARALFHF PRIDLARTAL LVIDLQTGFF DPPTAADAII PRVNRLAGEL
RAAGGTIAFL RHSGSDDPAL SVPAWQKEIP TLAALDRRMR PGLETHQLDR RLDVRADDLI
VDKYRYSAFI AGSSRLDELL RARGIDTVIV TGAFTNFCCE STARDGLMLG YRVVFVADAT
LARTQEEHVM ALTALQLAFA DVRTTAATAA LIADSLTP
|
|---|
| |